miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24203 3' -55.5 NC_005263.2 + 40902 0.66 0.698724
Target:  5'- cGCCgGCGAUGGuCGCggacucgguaucuACUGCGcCGGCu -3'
miRNA:   3'- -UGG-CGCUGCU-GCGau-----------UGACGCuGCUG- -5'
24203 3' -55.5 NC_005263.2 + 1438 0.66 0.694376
Target:  5'- gGCUGCGcGCGAgGCUucGCgGCGcucGCGGCg -3'
miRNA:   3'- -UGGCGC-UGCUgCGAu-UGaCGC---UGCUG- -5'
24203 3' -55.5 NC_005263.2 + 42505 0.66 0.694376
Target:  5'- aGCCGCGcCGAUGC--GCUGacgGACGcCa -3'
miRNA:   3'- -UGGCGCuGCUGCGauUGACg--CUGCuG- -5'
24203 3' -55.5 NC_005263.2 + 20039 0.66 0.694376
Target:  5'- gAUCGUGcCGcGCGUUGAgUGCGACGcGCu -3'
miRNA:   3'- -UGGCGCuGC-UGCGAUUgACGCUGC-UG- -5'
24203 3' -55.5 NC_005263.2 + 5469 0.66 0.694376
Target:  5'- uGCCaCGuCGGCGCUGcuucguGCUGCu-CGACa -3'
miRNA:   3'- -UGGcGCuGCUGCGAU------UGACGcuGCUG- -5'
24203 3' -55.5 NC_005263.2 + 9436 0.66 0.693287
Target:  5'- aGCCGCGcaccuugaucuugGCGAgGUUGGCgucgaUGCG-CGACg -3'
miRNA:   3'- -UGGCGC-------------UGCUgCGAUUG-----ACGCuGCUG- -5'
24203 3' -55.5 NC_005263.2 + 46416 0.66 0.683463
Target:  5'- gGCCaacuCGACGAUGU--ACUGC-ACGACg -3'
miRNA:   3'- -UGGc---GCUGCUGCGauUGACGcUGCUG- -5'
24203 3' -55.5 NC_005263.2 + 7004 0.66 0.683463
Target:  5'- aACCGCacgugcggauuGGCGGCGCgaAACgUGuCGACGAUc -3'
miRNA:   3'- -UGGCG-----------CUGCUGCGa-UUG-AC-GCUGCUG- -5'
24203 3' -55.5 NC_005263.2 + 14013 0.66 0.683463
Target:  5'- gACgCGCGA-GGCGC-AGCgacgGCGACGGu -3'
miRNA:   3'- -UG-GCGCUgCUGCGaUUGa---CGCUGCUg -5'
24203 3' -55.5 NC_005263.2 + 43478 0.66 0.676892
Target:  5'- gAUCGCGAUGGCGCUcaAuuacggcaccucgaaGCUGCcggcGCGGCc -3'
miRNA:   3'- -UGGCGCUGCUGCGA--U---------------UGACGc---UGCUG- -5'
24203 3' -55.5 NC_005263.2 + 10671 0.66 0.672502
Target:  5'- gACCGCG-CG-CGCcGACguaUGACGACg -3'
miRNA:   3'- -UGGCGCuGCuGCGaUUGac-GCUGCUG- -5'
24203 3' -55.5 NC_005263.2 + 21131 0.66 0.672502
Target:  5'- uGCUGCu-CGGCGCgcagGACUGCaguccgacacccGGCGGCu -3'
miRNA:   3'- -UGGCGcuGCUGCGa---UUGACG------------CUGCUG- -5'
24203 3' -55.5 NC_005263.2 + 12280 0.66 0.665905
Target:  5'- uCCGCGACGaACGCguggaagAACUcgucguacuugccgaGCGGCGcCa -3'
miRNA:   3'- uGGCGCUGC-UGCGa------UUGA---------------CGCUGCuG- -5'
24203 3' -55.5 NC_005263.2 + 2476 0.66 0.665905
Target:  5'- aGCCGCGuuguucgugacgauCGACGCUGcCUcgagaucgggcGCGACGuACa -3'
miRNA:   3'- -UGGCGCu-------------GCUGCGAUuGA-----------CGCUGC-UG- -5'
24203 3' -55.5 NC_005263.2 + 12466 0.66 0.665905
Target:  5'- cCCGCGcggaacacgauaccgGCGGCGCgcAUUGCGGCa-- -3'
miRNA:   3'- uGGCGC---------------UGCUGCGauUGACGCUGcug -5'
24203 3' -55.5 NC_005263.2 + 47678 0.66 0.661501
Target:  5'- gUCGCGGCGAUcCUcguGCUGUG-CGGCa -3'
miRNA:   3'- uGGCGCUGCUGcGAu--UGACGCuGCUG- -5'
24203 3' -55.5 NC_005263.2 + 32661 0.66 0.661501
Target:  5'- uCCG-GAUGGCGCggguCgGCGGCGAUg -3'
miRNA:   3'- uGGCgCUGCUGCGauu-GaCGCUGCUG- -5'
24203 3' -55.5 NC_005263.2 + 20873 0.66 0.661501
Target:  5'- gGCCgGCGGCGcgaucACGCUcACgaGCGGCGGu -3'
miRNA:   3'- -UGG-CGCUGC-----UGCGAuUGa-CGCUGCUg -5'
24203 3' -55.5 NC_005263.2 + 8155 0.66 0.661501
Target:  5'- -gCGUGAUGAUGCc--CUGCGACuGCg -3'
miRNA:   3'- ugGCGCUGCUGCGauuGACGCUGcUG- -5'
24203 3' -55.5 NC_005263.2 + 16720 0.66 0.661501
Target:  5'- gGCCGCGAgcggUGGCGC-AAUUGCc-CGGCg -3'
miRNA:   3'- -UGGCGCU----GCUGCGaUUGACGcuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.