miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24203 5' -60 NC_005263.2 + 23525 0.66 0.467183
Target:  5'- -uGCGCCCGacaUGauauUCGGCGUgccgACCGUGg -3'
miRNA:   3'- gcCGCGGGCg--AC----AGUUGCGa---UGGCGC- -5'
24203 5' -60 NC_005263.2 + 1132 0.66 0.467183
Target:  5'- -cGCGCCgUGCUGcgcaCGGCGUUgcACCGCGu -3'
miRNA:   3'- gcCGCGG-GCGACa---GUUGCGA--UGGCGC- -5'
24203 5' -60 NC_005263.2 + 10257 0.66 0.467183
Target:  5'- uCGGCGCaCGCgGUUcGCGaaacGCCGCGu -3'
miRNA:   3'- -GCCGCGgGCGaCAGuUGCga--UGGCGC- -5'
24203 5' -60 NC_005263.2 + 47298 0.66 0.467183
Target:  5'- aGcGCaGUCCGCUGUCGACGgacugggUGCCGaCGu -3'
miRNA:   3'- gC-CG-CGGGCGACAGUUGCg------AUGGC-GC- -5'
24203 5' -60 NC_005263.2 + 10886 0.66 0.457457
Target:  5'- cCGGCGCgCGUcGUgAGCGgCguaucGCCGCGc -3'
miRNA:   3'- -GCCGCGgGCGaCAgUUGC-Ga----UGGCGC- -5'
24203 5' -60 NC_005263.2 + 23910 0.66 0.457457
Target:  5'- aGcGCGCCCGCgagcgugaccGUCGcuuugGCgGCUugCGCGu -3'
miRNA:   3'- gC-CGCGGGCGa---------CAGU-----UG-CGAugGCGC- -5'
24203 5' -60 NC_005263.2 + 1794 0.66 0.457457
Target:  5'- aCGGCGUUCGagccgaucGUCAguuccuggAUGCUGCCGCc -3'
miRNA:   3'- -GCCGCGGGCga------CAGU--------UGCGAUGGCGc -5'
24203 5' -60 NC_005263.2 + 20710 0.66 0.457457
Target:  5'- cCGGuCGUgaCGCagccgGUCAGCGCgccgGCCGCc -3'
miRNA:   3'- -GCC-GCGg-GCGa----CAGUUGCGa---UGGCGc -5'
24203 5' -60 NC_005263.2 + 17102 0.66 0.45649
Target:  5'- gGGCGCCCGCgUGUUGAuCGUggucgacuacaagUACgGCu -3'
miRNA:   3'- gCCGCGGGCG-ACAGUU-GCG-------------AUGgCGc -5'
24203 5' -60 NC_005263.2 + 9885 0.66 0.44784
Target:  5'- uCGGCGCUuucaUGCUcgucGUCGGCGC-GCgGCGu -3'
miRNA:   3'- -GCCGCGG----GCGA----CAGUUGCGaUGgCGC- -5'
24203 5' -60 NC_005263.2 + 14111 0.66 0.44784
Target:  5'- gCGGCGgUCGCcGUCGcgauCGUaGCCGCa -3'
miRNA:   3'- -GCCGCgGGCGaCAGUu---GCGaUGGCGc -5'
24203 5' -60 NC_005263.2 + 39369 0.66 0.44784
Target:  5'- gCGGCGgCgCGCUucuaCGACGC-ACCGCa -3'
miRNA:   3'- -GCCGCgG-GCGAca--GUUGCGaUGGCGc -5'
24203 5' -60 NC_005263.2 + 26866 0.66 0.44784
Target:  5'- uGGCGCgcaCCGCgccGUCGAUGCgaaaGCCGg- -3'
miRNA:   3'- gCCGCG---GGCGa--CAGUUGCGa---UGGCgc -5'
24203 5' -60 NC_005263.2 + 44746 0.66 0.44784
Target:  5'- uGGCGCa--CUGUCugguCGCUcgACCGCGc -3'
miRNA:   3'- gCCGCGggcGACAGuu--GCGA--UGGCGC- -5'
24203 5' -60 NC_005263.2 + 41812 0.66 0.44784
Target:  5'- gGGCGCgCCGgUGUUGcUGUUugCGCa -3'
miRNA:   3'- gCCGCG-GGCgACAGUuGCGAugGCGc -5'
24203 5' -60 NC_005263.2 + 9555 0.66 0.444025
Target:  5'- gCGGCGCUCGCggcuugccaggCGGCGCgcucGCUGCc -3'
miRNA:   3'- -GCCGCGGGCGaca--------GUUGCGa---UGGCGc -5'
24203 5' -60 NC_005263.2 + 19958 0.66 0.438336
Target:  5'- -uGCGCUCGCgUGcUCGGCGCUGgCaGCGu -3'
miRNA:   3'- gcCGCGGGCG-AC-AGUUGCGAUgG-CGC- -5'
24203 5' -60 NC_005263.2 + 39892 0.66 0.438336
Target:  5'- gGGuCGCCgGCUGUCGAaGCggUCGUGa -3'
miRNA:   3'- gCC-GCGGgCGACAGUUgCGauGGCGC- -5'
24203 5' -60 NC_005263.2 + 676 0.66 0.438336
Target:  5'- aCGGUaguGCCCGUgcucgGUgAGCGCgaucgUGCCGCc -3'
miRNA:   3'- -GCCG---CGGGCGa----CAgUUGCG-----AUGGCGc -5'
24203 5' -60 NC_005263.2 + 23419 0.66 0.438336
Target:  5'- uCGGCGCgCCGCcGUUAccgGCGCccccgAUCGUGu -3'
miRNA:   3'- -GCCGCG-GGCGaCAGU---UGCGa----UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.