miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24203 5' -60 NC_005263.2 + 183 0.72 0.197809
Target:  5'- gGGCgaGCCCGCUGcCcguGCGCccgGCCGCu -3'
miRNA:   3'- gCCG--CGGGCGACaGu--UGCGa--UGGCGc -5'
24203 5' -60 NC_005263.2 + 676 0.66 0.438336
Target:  5'- aCGGUaguGCCCGUgcucgGUgAGCGCgaucgUGCCGCc -3'
miRNA:   3'- -GCCG---CGGGCGa----CAgUUGCG-----AUGGCGc -5'
24203 5' -60 NC_005263.2 + 1132 0.66 0.467183
Target:  5'- -cGCGCCgUGCUGcgcaCGGCGUUgcACCGCGu -3'
miRNA:   3'- gcCGCGG-GCGACa---GUUGCGA--UGGCGC- -5'
24203 5' -60 NC_005263.2 + 1456 0.67 0.375224
Target:  5'- gCGGCGCUCGCg----GCGCUGCaGCa -3'
miRNA:   3'- -GCCGCGGGCGacaguUGCGAUGgCGc -5'
24203 5' -60 NC_005263.2 + 1794 0.66 0.457457
Target:  5'- aCGGCGUUCGagccgaucGUCAguuccuggAUGCUGCCGCc -3'
miRNA:   3'- -GCCGCGGGCga------CAGU--------UGCGAUGGCGc -5'
24203 5' -60 NC_005263.2 + 2037 0.69 0.275288
Target:  5'- aCGGCGCCCGCUcGuucagucgaucuUCGACGag-UCGCGa -3'
miRNA:   3'- -GCCGCGGGCGA-C------------AGUUGCgauGGCGC- -5'
24203 5' -60 NC_005263.2 + 2673 0.67 0.410536
Target:  5'- aGGCGUgCGUUGUgGuagcugaucGCGCgGCCGCu -3'
miRNA:   3'- gCCGCGgGCGACAgU---------UGCGaUGGCGc -5'
24203 5' -60 NC_005263.2 + 2675 0.68 0.318549
Target:  5'- cCGGCaGCCUGCagUGUCG-CGCcgGCgGCGg -3'
miRNA:   3'- -GCCG-CGGGCG--ACAGUuGCGa-UGgCGC- -5'
24203 5' -60 NC_005263.2 + 3005 0.67 0.410536
Target:  5'- cCGGCGCauCCGCcG-CGACGUaGCgCGCGa -3'
miRNA:   3'- -GCCGCG--GGCGaCaGUUGCGaUG-GCGC- -5'
24203 5' -60 NC_005263.2 + 3532 0.68 0.350122
Target:  5'- uCGGCGUaaaGCggGaUCAGCGCagUGCCGCGc -3'
miRNA:   3'- -GCCGCGgg-CGa-C-AGUUGCG--AUGGCGC- -5'
24203 5' -60 NC_005263.2 + 4793 0.67 0.401515
Target:  5'- gGGUgaGCCCGC-GUCGcgugACGCUcauacGCCGCc -3'
miRNA:   3'- gCCG--CGGGCGaCAGU----UGCGA-----UGGCGc -5'
24203 5' -60 NC_005263.2 + 5404 0.68 0.358355
Target:  5'- aCGGcCGCCCuCUG-CAACGCc-CUGCGa -3'
miRNA:   3'- -GCC-GCGGGcGACaGUUGCGauGGCGC- -5'
24203 5' -60 NC_005263.2 + 6589 0.72 0.192712
Target:  5'- aGGCGCaaGUaGUCGACGCgAUCGCGu -3'
miRNA:   3'- gCCGCGggCGaCAGUUGCGaUGGCGC- -5'
24203 5' -60 NC_005263.2 + 7979 0.66 0.438336
Target:  5'- gCGGCGCCagaGCUgcacgaGUCGGCccgaUGCCGUGu -3'
miRNA:   3'- -GCCGCGGg--CGA------CAGUUGcg--AUGGCGC- -5'
24203 5' -60 NC_005263.2 + 8039 0.72 0.187731
Target:  5'- aGGCGUCCGCgc-CGugGC-GCCGCGc -3'
miRNA:   3'- gCCGCGGGCGacaGUugCGaUGGCGC- -5'
24203 5' -60 NC_005263.2 + 8379 0.67 0.366723
Target:  5'- --uCGCUCGCcagGUCGACGCggcCCGCGc -3'
miRNA:   3'- gccGCGGGCGa--CAGUUGCGau-GGCGC- -5'
24203 5' -60 NC_005263.2 + 9201 0.69 0.296306
Target:  5'- gCGGCGCCCgGCuUGcUCGugACGgUGCCGuCGg -3'
miRNA:   3'- -GCCGCGGG-CG-AC-AGU--UGCgAUGGC-GC- -5'
24203 5' -60 NC_005263.2 + 9555 0.66 0.444025
Target:  5'- gCGGCGCUCGCggcuugccaggCGGCGCgcucGCUGCc -3'
miRNA:   3'- -GCCGCGGGCGaca--------GUUGCGa---UGGCGc -5'
24203 5' -60 NC_005263.2 + 9595 0.69 0.282159
Target:  5'- uGGCGaCCUGCgacacGUCGACGCcgauCUGCGu -3'
miRNA:   3'- gCCGC-GGGCGa----CAGUUGCGau--GGCGC- -5'
24203 5' -60 NC_005263.2 + 9885 0.66 0.44784
Target:  5'- uCGGCGCUuucaUGCUcgucGUCGGCGC-GCgGCGu -3'
miRNA:   3'- -GCCGCGG----GCGA----CAGUUGCGaUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.