miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 3' -52.6 NC_005263.2 + 33647 0.67 0.792547
Target:  5'- aGGCGUGcCGccgcucggcUcgAAagaGGCGCGCGCGc -3'
miRNA:   3'- aCUGCACuGC---------AuaUUg--CCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 3702 0.67 0.792547
Target:  5'- cGACGUcGACGcc-AAUGcCGCGCGCGu -3'
miRNA:   3'- aCUGCA-CUGCauaUUGCcGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 44350 0.67 0.782505
Target:  5'- cGACGUcGACauuguACGGCACGUacGCGc -3'
miRNA:   3'- aCUGCA-CUGcauauUGCCGUGCG--CGC- -5'
24204 3' -52.6 NC_005263.2 + 26524 0.67 0.782505
Target:  5'- cGGCGUcGACGccggcGGCGaGCACGCgGCGc -3'
miRNA:   3'- aCUGCA-CUGCaua--UUGC-CGUGCG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 20860 0.67 0.782505
Target:  5'- cGACGcGAgCGUcgcAACGGCGCuGCGCc -3'
miRNA:   3'- aCUGCaCU-GCAua-UUGCCGUG-CGCGc -5'
24204 3' -52.6 NC_005263.2 + 18449 0.67 0.782505
Target:  5'- cGAgGUGcGCGUGaAGCaGC-CGCGCGg -3'
miRNA:   3'- aCUgCAC-UGCAUaUUGcCGuGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 5537 0.67 0.7723
Target:  5'- aUGcCGUGGCcggcAACGGcCugGCGCGa -3'
miRNA:   3'- -ACuGCACUGcauaUUGCC-GugCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 27815 0.67 0.7723
Target:  5'- gUGAuCGcGGCGUcaccuucGCGGCACGCGUu -3'
miRNA:   3'- -ACU-GCaCUGCAuau----UGCCGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 39683 0.67 0.7723
Target:  5'- aGACGUgGACGcgAUGG-GGCGaGCGCGa -3'
miRNA:   3'- aCUGCA-CUGCa-UAUUgCCGUgCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 6602 0.67 0.7723
Target:  5'- cGACGcGaucGCGUucGGCGGCGCGCuCGg -3'
miRNA:   3'- aCUGCaC---UGCAuaUUGCCGUGCGcGC- -5'
24204 3' -52.6 NC_005263.2 + 45187 0.67 0.761944
Target:  5'- -cACGuUGACGguuacGACGGC-CGCGCa -3'
miRNA:   3'- acUGC-ACUGCaua--UUGCCGuGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 15470 0.67 0.761944
Target:  5'- cGACGauuUGcCGUGcuGCGGCG-GCGCGg -3'
miRNA:   3'- aCUGC---ACuGCAUauUGCCGUgCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 10863 0.67 0.761944
Target:  5'- cGGCGUcgcGGCGgaacuCGGCaccgGCGCGCGu -3'
miRNA:   3'- aCUGCA---CUGCauauuGCCG----UGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 38433 0.68 0.75145
Target:  5'- cGACGUGcguuACGUGcucGGCGGCGacauUGCGCu -3'
miRNA:   3'- aCUGCAC----UGCAUa--UUGCCGU----GCGCGc -5'
24204 3' -52.6 NC_005263.2 + 8575 0.68 0.75145
Target:  5'- cGGCGUGuCGUccGUuACGcCGCGCGCu -3'
miRNA:   3'- aCUGCACuGCA--UAuUGCcGUGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 35754 0.68 0.75145
Target:  5'- aGGCGcgGGCGcgGUuacuGCGGCugGCgGCGu -3'
miRNA:   3'- aCUGCa-CUGCa-UAu---UGCCGugCG-CGC- -5'
24204 3' -52.6 NC_005263.2 + 27145 0.68 0.75145
Target:  5'- -cGCGUcGGCGaUGUccGACaGCGCGCGCGc -3'
miRNA:   3'- acUGCA-CUGC-AUA--UUGcCGUGCGCGC- -5'
24204 3' -52.6 NC_005263.2 + 38511 0.68 0.74083
Target:  5'- cGGCGUcGACGUGUcgcaggucgccAAgGGCAgcgaGCGCGc -3'
miRNA:   3'- aCUGCA-CUGCAUA-----------UUgCCGUg---CGCGC- -5'
24204 3' -52.6 NC_005263.2 + 43188 0.68 0.730096
Target:  5'- cGGCGcGAUGUuuugGAUGGCgacgGCGCGCu -3'
miRNA:   3'- aCUGCaCUGCAua--UUGCCG----UGCGCGc -5'
24204 3' -52.6 NC_005263.2 + 2238 0.68 0.729016
Target:  5'- cGGCGUGAuccucgaacuugcCGUAgcGCGcCGCGCGCu -3'
miRNA:   3'- aCUGCACU-------------GCAUauUGCcGUGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.