miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24204 5' -58 NC_005263.2 + 12204 1.09 0.000436
Target:  5'- gGUCGCCUGUGUCUCGACCGCACCGACa -3'
miRNA:   3'- -CAGCGGACACAGAGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 9694 0.75 0.139137
Target:  5'- cGUCGCgCUuUGccugCUCGACCGCugCGGCg -3'
miRNA:   3'- -CAGCG-GAcACa---GAGCUGGCGugGCUG- -5'
24204 5' -58 NC_005263.2 + 17676 0.75 0.151049
Target:  5'- -aCGCUgcucgcgCUCGACCGCACCGACc -3'
miRNA:   3'- caGCGGacaca--GAGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 44753 0.72 0.219628
Target:  5'- -cUGUCUGgucgCUCGACCGCGCgCGGCg -3'
miRNA:   3'- caGCGGACaca-GAGCUGGCGUG-GCUG- -5'
24204 5' -58 NC_005263.2 + 27685 0.72 0.231359
Target:  5'- -cCGCCU---UCUUGugCGCGCCGGCg -3'
miRNA:   3'- caGCGGAcacAGAGCugGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 30951 0.72 0.249942
Target:  5'- uUCGgCU---UCUCGGCCGUGCCGACg -3'
miRNA:   3'- cAGCgGAcacAGAGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 8382 0.71 0.276613
Target:  5'- cUCGCCaG-GUCgacgCGGcCCGCGCCGGCc -3'
miRNA:   3'- cAGCGGaCaCAGa---GCU-GGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 9666 0.7 0.298073
Target:  5'- aUCGCC---GUCUUGACCGUgGCCGGCg -3'
miRNA:   3'- cAGCGGacaCAGAGCUGGCG-UGGCUG- -5'
24204 5' -58 NC_005263.2 + 9738 0.7 0.305508
Target:  5'- uUCGCCacagcaGUGUCgaucgCgGugCGCACCGACu -3'
miRNA:   3'- cAGCGGa-----CACAGa----G-CugGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 30713 0.7 0.328661
Target:  5'- -cCGCCaGgcgCgCGGCCGCGCCGGCa -3'
miRNA:   3'- caGCGGaCacaGaGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 45401 0.7 0.335051
Target:  5'- cUCGCCgacgaacucgGUCugUCGGCCGCcGCCGGCg -3'
miRNA:   3'- cAGCGGaca-------CAG--AGCUGGCG-UGGCUG- -5'
24204 5' -58 NC_005263.2 + 41479 0.69 0.344804
Target:  5'- -aCGCgCgacUG-CUCGACCGCGCCGAg -3'
miRNA:   3'- caGCG-Gac-ACaGAGCUGGCGUGGCUg -5'
24204 5' -58 NC_005263.2 + 22781 0.68 0.386712
Target:  5'- cGUCGCCgcguuUGUGagcggcuUCUCGACCGa--CGACg -3'
miRNA:   3'- -CAGCGG-----ACAC-------AGAGCUGGCgugGCUG- -5'
24204 5' -58 NC_005263.2 + 3905 0.68 0.387601
Target:  5'- uUCGCacccucgGUGUCUUu-CUGCACCGGCa -3'
miRNA:   3'- cAGCGga-----CACAGAGcuGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 24056 0.68 0.387601
Target:  5'- uUCGCgCUGuUGUUgUCGGCCGUGCUGAUc -3'
miRNA:   3'- cAGCG-GAC-ACAG-AGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 42248 0.68 0.39657
Target:  5'- -cCGCCUGcgGcUCgacuUCGACCGCacgacgGCCGACa -3'
miRNA:   3'- caGCGGACa-C-AG----AGCUGGCG------UGGCUG- -5'
24204 5' -58 NC_005263.2 + 31573 0.68 0.414903
Target:  5'- -gCGCC-GUG-CUCGACaaCGCCGACa -3'
miRNA:   3'- caGCGGaCACaGAGCUGgcGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 33963 0.67 0.443354
Target:  5'- aGUCGCCaa-Gg--CGGCCGCGCUGGCc -3'
miRNA:   3'- -CAGCGGacaCagaGCUGGCGUGGCUG- -5'
24204 5' -58 NC_005263.2 + 19092 0.67 0.447231
Target:  5'- cGUCGCg-GUG-CgcaacgcacugccggUCGGCCGCGCCGAg -3'
miRNA:   3'- -CAGCGgaCACaG---------------AGCUGGCGUGGCUg -5'
24204 5' -58 NC_005263.2 + 39416 0.67 0.46292
Target:  5'- uGUCGCCgcaccUGUCgUCGACCGguUCGuCg -3'
miRNA:   3'- -CAGCGGac---ACAG-AGCUGGCguGGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.