miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24208 3' -54.1 NC_005263.2 + 522 0.66 0.773702
Target:  5'- cCGUCuccaaugcaaaGCGCCGCcc-GCAgGUGG-CGCa -3'
miRNA:   3'- -GCAG-----------UGCGGCGucaUGUgUACCuGCG- -5'
24208 3' -54.1 NC_005263.2 + 42505 0.66 0.773702
Target:  5'- aGcCGCGCCGa--UGCGCugacGGACGCc -3'
miRNA:   3'- gCaGUGCGGCgucAUGUGua--CCUGCG- -5'
24208 3' -54.1 NC_005263.2 + 38324 0.66 0.763462
Target:  5'- gCGagGCGCCcccguuCGGUGCG-AUGGAUGCg -3'
miRNA:   3'- -GCagUGCGGc-----GUCAUGUgUACCUGCG- -5'
24208 3' -54.1 NC_005263.2 + 38414 0.66 0.763462
Target:  5'- uGUCGCG-CGUcgGGUGCGCcgGcguGACGCc -3'
miRNA:   3'- gCAGUGCgGCG--UCAUGUGuaC---CUGCG- -5'
24208 3' -54.1 NC_005263.2 + 23386 0.66 0.763462
Target:  5'- uCGUCguauugccgccuGCGCCGCccgGCACGUucGGCGCg -3'
miRNA:   3'- -GCAG------------UGCGGCGucaUGUGUAc-CUGCG- -5'
24208 3' -54.1 NC_005263.2 + 20501 0.66 0.763462
Target:  5'- cCGUCGCGCCGCAcgucgagucGUuCAucgaaguugcugUcgGGGCGUa -3'
miRNA:   3'- -GCAGUGCGGCGU---------CAuGU------------GuaCCUGCG- -5'
24208 3' -54.1 NC_005263.2 + 26954 0.66 0.762431
Target:  5'- aCGUCGCuGCCGuCGGUcgugauaGCGCuUGGcUGCa -3'
miRNA:   3'- -GCAGUG-CGGC-GUCA-------UGUGuACCuGCG- -5'
24208 3' -54.1 NC_005263.2 + 21596 0.66 0.762431
Target:  5'- gCGUCgACGCCGCgcgcaacAGUuacaucaagGCGCAgugcgGcGACGCg -3'
miRNA:   3'- -GCAG-UGCGGCG-------UCA---------UGUGUa----C-CUGCG- -5'
24208 3' -54.1 NC_005263.2 + 45740 0.66 0.760363
Target:  5'- gGUUACGCCGCgucgaucaacuuccAGcUGCGCAacGGcCGCa -3'
miRNA:   3'- gCAGUGCGGCG--------------UC-AUGUGUa-CCuGCG- -5'
24208 3' -54.1 NC_005263.2 + 36003 0.66 0.753085
Target:  5'- gCG-CGCGCCGC--UGCGCAUgccaGGcCGCg -3'
miRNA:   3'- -GCaGUGCGGCGucAUGUGUA----CCuGCG- -5'
24208 3' -54.1 NC_005263.2 + 18606 0.66 0.742582
Target:  5'- aCGg-ACGCCGCAGcggcguuCGCGgcaGGugGCa -3'
miRNA:   3'- -GCagUGCGGCGUCau-----GUGUa--CCugCG- -5'
24208 3' -54.1 NC_005263.2 + 45885 0.66 0.742582
Target:  5'- -aUCACGCCGUGaucGCGCAgGGGCGa -3'
miRNA:   3'- gcAGUGCGGCGUca-UGUGUaCCUGCg -5'
24208 3' -54.1 NC_005263.2 + 24201 0.66 0.731966
Target:  5'- gGUCACGCuCGCGGgcGCGCucacGaGCGCg -3'
miRNA:   3'- gCAGUGCG-GCGUCa-UGUGua--CcUGCG- -5'
24208 3' -54.1 NC_005263.2 + 9521 0.66 0.731966
Target:  5'- uGUCGuCGCCGUga-GCGCGUcGGACGg -3'
miRNA:   3'- gCAGU-GCGGCGucaUGUGUA-CCUGCg -5'
24208 3' -54.1 NC_005263.2 + 41810 0.66 0.731966
Target:  5'- cCGggCGCGCCGguGUugcuguuuGCGCA--GACGCc -3'
miRNA:   3'- -GCa-GUGCGGCguCA--------UGUGUacCUGCG- -5'
24208 3' -54.1 NC_005263.2 + 9259 0.66 0.730898
Target:  5'- cCGUgACGCCGCucgAGUcCGCGaucaucuugccguUGGACGa -3'
miRNA:   3'- -GCAgUGCGGCG---UCAuGUGU-------------ACCUGCg -5'
24208 3' -54.1 NC_005263.2 + 31121 0.67 0.725546
Target:  5'- gGUCGCGUCGCucaGGUauucgccgaaacgcuGCACGUacGGCGCg -3'
miRNA:   3'- gCAGUGCGGCG---UCA---------------UGUGUAc-CUGCG- -5'
24208 3' -54.1 NC_005263.2 + 19116 0.67 0.721246
Target:  5'- gGUCG-GCCGCGccGaGCGCAUcgccGGGCGCu -3'
miRNA:   3'- gCAGUgCGGCGU--CaUGUGUA----CCUGCG- -5'
24208 3' -54.1 NC_005263.2 + 26526 0.67 0.721246
Target:  5'- gCGUCgACGCCgGCGGcgaGCACGcGG-CGCu -3'
miRNA:   3'- -GCAG-UGCGG-CGUCa--UGUGUaCCuGCG- -5'
24208 3' -54.1 NC_005263.2 + 20744 0.67 0.716933
Target:  5'- cCGcCGCGCCGCucgcuggcggccuGUA-ACAUGGcCGCg -3'
miRNA:   3'- -GCaGUGCGGCGu------------CAUgUGUACCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.