miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24208 5' -55.8 NC_005263.2 + 768 0.66 0.725227
Target:  5'- aCGCGCaGCgCGAUGUAcGACuGCGGGu -3'
miRNA:   3'- cGCGCG-CG-GCUGCAUaCUGcUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 35757 0.66 0.725227
Target:  5'- cGCGgGCGCgGuuacuGCGgcUGGCGGCGuGc -3'
miRNA:   3'- -CGCgCGCGgC-----UGCauACUGCUGCuCc -5'
24208 5' -55.8 NC_005263.2 + 47229 0.66 0.725227
Target:  5'- cGCGCugaacgaaGCGCCGGCcg--GcACGACGGGu -3'
miRNA:   3'- -CGCG--------CGCGGCUGcauaC-UGCUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 38334 0.66 0.725227
Target:  5'- uGCGCGCG-CGAcCGUGcacGCGGCGAccGGc -3'
miRNA:   3'- -CGCGCGCgGCU-GCAUac-UGCUGCU--CC- -5'
24208 5' -55.8 NC_005263.2 + 30962 0.66 0.725227
Target:  5'- gGC-CGUGCCGACGUc-GACGACc--- -3'
miRNA:   3'- -CGcGCGCGGCUGCAuaCUGCUGcucc -5'
24208 5' -55.8 NC_005263.2 + 2687 0.66 0.711571
Target:  5'- aGUGuCGCGCCGGCGgcggccGAcagaccgaguucguCGGCGAGa -3'
miRNA:   3'- -CGC-GCGCGGCUGCaua---CU--------------GCUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 44134 0.66 0.711571
Target:  5'- gGCGCGCGCCcguuacaacGGCcugccaggcucgcuGgcUGGCGcguGCGAGGc -3'
miRNA:   3'- -CGCGCGCGG---------CUG--------------CauACUGC---UGCUCC- -5'
24208 5' -55.8 NC_005263.2 + 37124 0.66 0.704164
Target:  5'- cGCauuCGCGCCaucgagGACGUcgGACaguuGCGAGGu -3'
miRNA:   3'- -CGc--GCGCGG------CUGCAuaCUGc---UGCUCC- -5'
24208 5' -55.8 NC_005263.2 + 39529 0.66 0.704164
Target:  5'- -aGCGCG-CGGCGUAacgGACGACa--- -3'
miRNA:   3'- cgCGCGCgGCUGCAUa--CUGCUGcucc -5'
24208 5' -55.8 NC_005263.2 + 47357 0.66 0.693525
Target:  5'- uGCGCGuCGCCGAaaug-GGCGGCGc-- -3'
miRNA:   3'- -CGCGC-GCGGCUgcauaCUGCUGCucc -5'
24208 5' -55.8 NC_005263.2 + 28101 0.66 0.693525
Target:  5'- gGCGCG-GCCGaucGCGUcguUGACGGCaGuGGc -3'
miRNA:   3'- -CGCGCgCGGC---UGCAu--ACUGCUG-CuCC- -5'
24208 5' -55.8 NC_005263.2 + 29615 0.66 0.693525
Target:  5'- gGCGuUGCGCUucgGACGguacgagcaugAUGcCGGCGAGGu -3'
miRNA:   3'- -CGC-GCGCGG---CUGCa----------UACuGCUGCUCC- -5'
24208 5' -55.8 NC_005263.2 + 2866 0.66 0.693525
Target:  5'- aGCGUuCGCgaaCGACGUcgcaGCGGCGAGGc -3'
miRNA:   3'- -CGCGcGCG---GCUGCAuac-UGCUGCUCC- -5'
24208 5' -55.8 NC_005263.2 + 7129 0.66 0.682829
Target:  5'- cCGUGCGaCCGAC-UGUGGCGucGCGAa- -3'
miRNA:   3'- cGCGCGC-GGCUGcAUACUGC--UGCUcc -5'
24208 5' -55.8 NC_005263.2 + 6072 0.66 0.682829
Target:  5'- aCGCGCGCCGACaGgaagccuUGGCG-CGGccGGc -3'
miRNA:   3'- cGCGCGCGGCUG-Cau-----ACUGCuGCU--CC- -5'
24208 5' -55.8 NC_005263.2 + 41192 0.66 0.682829
Target:  5'- uUGCGCGCUGuGCGUccUGAUuggGACGAGa -3'
miRNA:   3'- cGCGCGCGGC-UGCAu-ACUG---CUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 20163 0.66 0.682829
Target:  5'- cGCGC-CGuCCGGCucAUcGACGACGAGc -3'
miRNA:   3'- -CGCGcGC-GGCUGcaUA-CUGCUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 32873 0.67 0.672085
Target:  5'- uCGaUGUGCCGGCG---GGCGGCGAGu -3'
miRNA:   3'- cGC-GCGCGGCUGCauaCUGCUGCUCc -5'
24208 5' -55.8 NC_005263.2 + 32748 0.67 0.672085
Target:  5'- aGCGUGCGCaguaCGACGUucagcgccGCGuCGGGGu -3'
miRNA:   3'- -CGCGCGCG----GCUGCAuac-----UGCuGCUCC- -5'
24208 5' -55.8 NC_005263.2 + 39724 0.67 0.672085
Target:  5'- gGCGCGgGCCG-CGUcgaccUGGCGAgCGAa- -3'
miRNA:   3'- -CGCGCgCGGCuGCAu----ACUGCU-GCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.