miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24209 3' -54.3 NC_005263.2 + 40636 0.66 0.73726
Target:  5'- ----gAGGCCaAGCGCGcaagCGGCGuGCa -3'
miRNA:   3'- gacuaUUUGG-UCGCGCa---GCCGCuCGa -5'
24209 3' -54.3 NC_005263.2 + 15473 0.66 0.73726
Target:  5'- -cGAUuuGCCGuGCuGCGgcggcgCGGUGAGCa -3'
miRNA:   3'- gaCUAuuUGGU-CG-CGCa-----GCCGCUCGa -5'
24209 3' -54.3 NC_005263.2 + 26505 0.66 0.727558
Target:  5'- uUGAUGuAACUguuGCGCGcggcgucgacgccggCGGCGAGCa -3'
miRNA:   3'- gACUAU-UUGGu--CGCGCa--------------GCCGCUCGa -5'
24209 3' -54.3 NC_005263.2 + 17492 0.66 0.726475
Target:  5'- cCUGAUcgcGCgCGGCGCGUCgaucgaucaGGCGgcGGCUa -3'
miRNA:   3'- -GACUAuu-UG-GUCGCGCAG---------CCGC--UCGA- -5'
24209 3' -54.3 NC_005263.2 + 20101 0.66 0.726475
Target:  5'- uCUGGUcGACCAGCGuCGcCGcGCaGGGUUa -3'
miRNA:   3'- -GACUAuUUGGUCGC-GCaGC-CG-CUCGA- -5'
24209 3' -54.3 NC_005263.2 + 677 0.66 0.704622
Target:  5'- -cGGUAGuGCCcGUGC-UCGGUGAGCg -3'
miRNA:   3'- gaCUAUU-UGGuCGCGcAGCCGCUCGa -5'
24209 3' -54.3 NC_005263.2 + 2707 0.66 0.704622
Target:  5'- -cGAcAGACCgAGUuCGUCGGCGAGa- -3'
miRNA:   3'- gaCUaUUUGG-UCGcGCAGCCGCUCga -5'
24209 3' -54.3 NC_005263.2 + 6122 0.66 0.704622
Target:  5'- uUGAUcgGCCGGUaUGUCGGUGcGCg -3'
miRNA:   3'- gACUAuuUGGUCGcGCAGCCGCuCGa -5'
24209 3' -54.3 NC_005263.2 + 24800 0.66 0.704622
Target:  5'- ------cGCCGG-GCGUCGGCGGcGCg -3'
miRNA:   3'- gacuauuUGGUCgCGCAGCCGCU-CGa -5'
24209 3' -54.3 NC_005263.2 + 34710 0.66 0.693578
Target:  5'- gUGGUcugcAAACCAuuGgGCGU-GGCGAGCa -3'
miRNA:   3'- gACUA----UUUGGU--CgCGCAgCCGCUCGa -5'
24209 3' -54.3 NC_005263.2 + 6779 0.67 0.682473
Target:  5'- -aGAUcguAAUCGGUGaCGcCGGCGGGCg -3'
miRNA:   3'- gaCUAu--UUGGUCGC-GCaGCCGCUCGa -5'
24209 3' -54.3 NC_005263.2 + 30233 0.67 0.6702
Target:  5'- aCUGAUcguucgcggcgAAGCguGCGCGguagucgUCGGCGaAGCg -3'
miRNA:   3'- -GACUA-----------UUUGguCGCGC-------AGCCGC-UCGa -5'
24209 3' -54.3 NC_005263.2 + 973 0.67 0.660124
Target:  5'- -cGGUc-GCCuGCGCGUCGGaCGGcGCUu -3'
miRNA:   3'- gaCUAuuUGGuCGCGCAGCC-GCU-CGA- -5'
24209 3' -54.3 NC_005263.2 + 9379 0.67 0.648903
Target:  5'- gCUGcgGGAauuUCAGCGCGgCGGCcAGCUg -3'
miRNA:   3'- -GACuaUUU---GGUCGCGCaGCCGcUCGA- -5'
24209 3' -54.3 NC_005263.2 + 12656 0.67 0.642162
Target:  5'- -cGAUAucgucgucGGCCGGCGCGcCGGggucgucguucgcguCGAGCUu -3'
miRNA:   3'- gaCUAU--------UUGGUCGCGCaGCC---------------GCUCGA- -5'
24209 3' -54.3 NC_005263.2 + 7419 0.67 0.637666
Target:  5'- -cGggAGAUCGGCGCGUCGaGCaGGUa -3'
miRNA:   3'- gaCuaUUUGGUCGCGCAGC-CGcUCGa -5'
24209 3' -54.3 NC_005263.2 + 4690 0.67 0.626423
Target:  5'- ----aGGAUCGuGC-CGUCGGCGAGCUu -3'
miRNA:   3'- gacuaUUUGGU-CGcGCAGCCGCUCGA- -5'
24209 3' -54.3 NC_005263.2 + 29213 0.68 0.615186
Target:  5'- ----cAGGCCGGCGCGuauuugccgUCGGCGcGCa -3'
miRNA:   3'- gacuaUUUGGUCGCGC---------AGCCGCuCGa -5'
24209 3' -54.3 NC_005263.2 + 27949 0.69 0.559423
Target:  5'- -cGAUGAGCCggacGGCGCGgaUGGCccaGAGCUg -3'
miRNA:   3'- gaCUAUUUGG----UCGCGCa-GCCG---CUCGA- -5'
24209 3' -54.3 NC_005263.2 + 9019 0.69 0.537483
Target:  5'- -gGAUuuucguGCC-GCGCGaCGGCGAGCc -3'
miRNA:   3'- gaCUAuu----UGGuCGCGCaGCCGCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.