Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24209 | 3' | -54.3 | NC_005263.2 | + | 40636 | 0.66 | 0.73726 |
Target: 5'- ----gAGGCCaAGCGCGcaagCGGCGuGCa -3' miRNA: 3'- gacuaUUUGG-UCGCGCa---GCCGCuCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 6122 | 0.66 | 0.704622 |
Target: 5'- uUGAUcgGCCGGUaUGUCGGUGcGCg -3' miRNA: 3'- gACUAuuUGGUCGcGCAGCCGCuCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 34710 | 0.66 | 0.693578 |
Target: 5'- gUGGUcugcAAACCAuuGgGCGU-GGCGAGCa -3' miRNA: 3'- gACUA----UUUGGU--CgCGCAgCCGCUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 2707 | 0.66 | 0.704622 |
Target: 5'- -cGAcAGACCgAGUuCGUCGGCGAGa- -3' miRNA: 3'- gaCUaUUUGG-UCGcGCAGCCGCUCga -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 677 | 0.66 | 0.704622 |
Target: 5'- -cGGUAGuGCCcGUGC-UCGGUGAGCg -3' miRNA: 3'- gaCUAUU-UGGuCGCGcAGCCGCUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 15473 | 0.66 | 0.73726 |
Target: 5'- -cGAUuuGCCGuGCuGCGgcggcgCGGUGAGCa -3' miRNA: 3'- gaCUAuuUGGU-CG-CGCa-----GCCGCUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 26505 | 0.66 | 0.727558 |
Target: 5'- uUGAUGuAACUguuGCGCGcggcgucgacgccggCGGCGAGCa -3' miRNA: 3'- gACUAU-UUGGu--CGCGCa--------------GCCGCUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 17492 | 0.66 | 0.726475 |
Target: 5'- cCUGAUcgcGCgCGGCGCGUCgaucgaucaGGCGgcGGCUa -3' miRNA: 3'- -GACUAuu-UG-GUCGCGCAG---------CCGC--UCGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 20101 | 0.66 | 0.726475 |
Target: 5'- uCUGGUcGACCAGCGuCGcCGcGCaGGGUUa -3' miRNA: 3'- -GACUAuUUGGUCGC-GCaGC-CG-CUCGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 24800 | 0.66 | 0.704622 |
Target: 5'- ------cGCCGG-GCGUCGGCGGcGCg -3' miRNA: 3'- gacuauuUGGUCgCGCAGCCGCU-CGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 4690 | 0.67 | 0.626423 |
Target: 5'- ----aGGAUCGuGC-CGUCGGCGAGCUu -3' miRNA: 3'- gacuaUUUGGU-CGcGCAGCCGCUCGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 30233 | 0.67 | 0.6702 |
Target: 5'- aCUGAUcguucgcggcgAAGCguGCGCGguagucgUCGGCGaAGCg -3' miRNA: 3'- -GACUA-----------UUUGguCGCGC-------AGCCGC-UCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 7419 | 0.67 | 0.637666 |
Target: 5'- -cGggAGAUCGGCGCGUCGaGCaGGUa -3' miRNA: 3'- gaCuaUUUGGUCGCGCAGC-CGcUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 12656 | 0.67 | 0.642162 |
Target: 5'- -cGAUAucgucgucGGCCGGCGCGcCGGggucgucguucgcguCGAGCUu -3' miRNA: 3'- gaCUAU--------UUGGUCGCGCaGCC---------------GCUCGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 973 | 0.67 | 0.660124 |
Target: 5'- -cGGUc-GCCuGCGCGUCGGaCGGcGCUu -3' miRNA: 3'- gaCUAuuUGGuCGCGCAGCC-GCU-CGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 9379 | 0.67 | 0.648903 |
Target: 5'- gCUGcgGGAauuUCAGCGCGgCGGCcAGCUg -3' miRNA: 3'- -GACuaUUU---GGUCGCGCaGCCGcUCGA- -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 6779 | 0.67 | 0.682473 |
Target: 5'- -aGAUcguAAUCGGUGaCGcCGGCGGGCg -3' miRNA: 3'- gaCUAu--UUGGUCGC-GCaGCCGCUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 29213 | 0.68 | 0.615186 |
Target: 5'- ----cAGGCCGGCGCGuauuugccgUCGGCGcGCa -3' miRNA: 3'- gacuaUUUGGUCGCGC---------AGCCGCuCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 45483 | 0.69 | 0.504097 |
Target: 5'- -cGAUGAACC-GCGCgGUCGGCcugucgcgcaauuGGGCg -3' miRNA: 3'- gaCUAUUUGGuCGCG-CAGCCG-------------CUCGa -5' |
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24209 | 3' | -54.3 | NC_005263.2 | + | 9019 | 0.69 | 0.537483 |
Target: 5'- -gGAUuuucguGCC-GCGCGaCGGCGAGCc -3' miRNA: 3'- gaCUAuu----UGGuCGCGCaGCCGCUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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