miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24209 5' -53.2 NC_005263.2 + 17039 0.66 0.801078
Target:  5'- cGCAGCG-GCUGGuGGCGGCgUGAacggCUUCa -3'
miRNA:   3'- -CGUCGCgUGGCU-CUGCUG-ACUa---GAAG- -5'
24209 5' -53.2 NC_005263.2 + 16022 0.66 0.801078
Target:  5'- cGCAGauCGCAUCGAGcguCGAC-GGUCUg- -3'
miRNA:   3'- -CGUC--GCGUGGCUCu--GCUGaCUAGAag -5'
24209 5' -53.2 NC_005263.2 + 39052 0.66 0.791135
Target:  5'- -aGGCGCuacagcuguucGCCGAGGCGAaagcGcgCUUCg -3'
miRNA:   3'- cgUCGCG-----------UGGCUCUGCUga--CuaGAAG- -5'
24209 5' -53.2 NC_005263.2 + 16110 0.66 0.781017
Target:  5'- cGCAGCuacgGCAgCCGAGACGGCac-UCaUCa -3'
miRNA:   3'- -CGUCG----CGU-GGCUCUGCUGacuAGaAG- -5'
24209 5' -53.2 NC_005263.2 + 18366 0.66 0.781017
Target:  5'- cCGGCGCACCuGcAGACGAUcaaggcGAaguUCUUCg -3'
miRNA:   3'- cGUCGCGUGG-C-UCUGCUGa-----CU---AGAAG- -5'
24209 5' -53.2 NC_005263.2 + 44043 0.66 0.781017
Target:  5'- cGCcGCGUuCCGuGGCGGCUGGUg--- -3'
miRNA:   3'- -CGuCGCGuGGCuCUGCUGACUAgaag -5'
24209 5' -53.2 NC_005263.2 + 17032 0.66 0.774868
Target:  5'- aGCAGCGCgucgcggccaagacgAUCGAcgGGCGACUGuUCggCa -3'
miRNA:   3'- -CGUCGCG---------------UGGCU--CUGCUGACuAGaaG- -5'
24209 5' -53.2 NC_005263.2 + 39703 0.66 0.770737
Target:  5'- aCGGU-CGCCGAGGCGGC-GcgCUUCc -3'
miRNA:   3'- cGUCGcGUGGCUCUGCUGaCuaGAAG- -5'
24209 5' -53.2 NC_005263.2 + 4001 0.67 0.749739
Target:  5'- aGCAGCGCACC----UGACcGAUCUg- -3'
miRNA:   3'- -CGUCGCGUGGcucuGCUGaCUAGAag -5'
24209 5' -53.2 NC_005263.2 + 12131 0.67 0.749739
Target:  5'- aCAGauCGCGCUcauGACGACUGA-CUUCg -3'
miRNA:   3'- cGUC--GCGUGGcu-CUGCUGACUaGAAG- -5'
24209 5' -53.2 NC_005263.2 + 24700 0.67 0.749739
Target:  5'- gGCGGCGCGCCGAacgugccgGGCGGCgcaggCggCa -3'
miRNA:   3'- -CGUCGCGUGGCU--------CUGCUGacua-GaaG- -5'
24209 5' -53.2 NC_005263.2 + 10187 0.67 0.728238
Target:  5'- gGCGGCGCGCCugcgccCGGCUGuucGUUUUCg -3'
miRNA:   3'- -CGUCGCGUGGcucu--GCUGAC---UAGAAG- -5'
24209 5' -53.2 NC_005263.2 + 17575 0.67 0.728238
Target:  5'- aGCAGCGCAUCGAGcugcucGCGcaGCggGGUCa-- -3'
miRNA:   3'- -CGUCGCGUGGCUC------UGC--UGa-CUAGaag -5'
24209 5' -53.2 NC_005263.2 + 31017 0.67 0.71733
Target:  5'- aGCAGUGCGgCGAGGCGcggcgugcGCUGcUCg-- -3'
miRNA:   3'- -CGUCGCGUgGCUCUGC--------UGACuAGaag -5'
24209 5' -53.2 NC_005263.2 + 3458 0.67 0.71733
Target:  5'- cGCGaCGCAUCGAGGCGcaGCUcGAUCa-- -3'
miRNA:   3'- -CGUcGCGUGGCUCUGC--UGA-CUAGaag -5'
24209 5' -53.2 NC_005263.2 + 46184 0.67 0.70523
Target:  5'- cCGGCGCGCuCGuGcagacgcGCGGCUGGUaCUUCc -3'
miRNA:   3'- cGUCGCGUG-GCuC-------UGCUGACUA-GAAG- -5'
24209 5' -53.2 NC_005263.2 + 29060 0.68 0.695261
Target:  5'- cGCGGCGCGuccUCGGGGCGGCgcgcAUCggccgUCg -3'
miRNA:   3'- -CGUCGCGU---GGCUCUGCUGac--UAGa----AG- -5'
24209 5' -53.2 NC_005263.2 + 2884 0.68 0.69415
Target:  5'- cGCAGCgGCgaggcugauguugGCCGAGACGuGCUGcgCggccgUCg -3'
miRNA:   3'- -CGUCG-CG-------------UGGCUCUGC-UGACuaGa----AG- -5'
24209 5' -53.2 NC_005263.2 + 8406 0.68 0.672936
Target:  5'- -aAGCGCGCCGccucGGCGACcgUGAagUUCg -3'
miRNA:   3'- cgUCGCGUGGCu---CUGCUG--ACUagAAG- -5'
24209 5' -53.2 NC_005263.2 + 35449 0.69 0.605345
Target:  5'- cCGGCGCGCCGGccGACGACgauAUCg-- -3'
miRNA:   3'- cGUCGCGUGGCU--CUGCUGac-UAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.