miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 3' -55.8 NC_005263.2 + 16411 0.66 0.652376
Target:  5'- gCGGGUG-CGGuacuCGGcGUCGGCGCugGCg- -3'
miRNA:   3'- -GUCCAUaGCUu---GCC-CAGCCGCG--UGac -5'
24212 3' -55.8 NC_005263.2 + 27726 0.66 0.630299
Target:  5'- -uGGcgaGUUGuACGGuGUCGGCGCGCg- -3'
miRNA:   3'- guCCa--UAGCuUGCC-CAGCCGCGUGac -5'
24212 3' -55.8 NC_005263.2 + 44991 0.67 0.597218
Target:  5'- -cGGacGUCGAgaACuGGuUCGGCGCGCUGu -3'
miRNA:   3'- guCCa-UAGCU--UGcCC-AGCCGCGUGAC- -5'
24212 3' -55.8 NC_005263.2 + 12853 0.67 0.575298
Target:  5'- gCAGcccGUAuUCGAugGGGcCGGCGUGCg- -3'
miRNA:   3'- -GUC---CAU-AGCUugCCCaGCCGCGUGac -5'
24212 3' -55.8 NC_005263.2 + 40935 0.68 0.532084
Target:  5'- cCGGGUAUCGcAGCGGcGaUGGcCGCGCa- -3'
miRNA:   3'- -GUCCAUAGC-UUGCC-CaGCC-GCGUGac -5'
24212 3' -55.8 NC_005263.2 + 27361 0.69 0.490095
Target:  5'- aCAGGccgccagCGAGCGGcgcggcggcgGcCGGCGCGCUGa -3'
miRNA:   3'- -GUCCaua----GCUUGCC----------CaGCCGCGUGAC- -5'
24212 3' -55.8 NC_005263.2 + 4478 0.7 0.439908
Target:  5'- --cGUG-CGcGCGGGUCGGCGUGCUu -3'
miRNA:   3'- gucCAUaGCuUGCCCAGCCGCGUGAc -5'
24212 3' -55.8 NC_005263.2 + 916 0.7 0.401018
Target:  5'- gCGGGUuacucgucgacgcAUCGAACGGGUUGGCaccCGCg- -3'
miRNA:   3'- -GUCCA-------------UAGCUUGCCCAGCCGc--GUGac -5'
24212 3' -55.8 NC_005263.2 + 27164 0.73 0.272389
Target:  5'- -uGGUGUCguuGAACGuGGUCGGCGCguucacgacgaaACUGg -3'
miRNA:   3'- guCCAUAG---CUUGC-CCAGCCGCG------------UGAC- -5'
24212 3' -55.8 NC_005263.2 + 10394 0.76 0.188502
Target:  5'- cCGGGccggccggCGAGCGGGUcCGGCGCGCg- -3'
miRNA:   3'- -GUCCaua-----GCUUGCCCA-GCCGCGUGac -5'
24212 3' -55.8 NC_005263.2 + 10048 1.09 0.000809
Target:  5'- cCAGGUAUCGAACGGGUCGGCGCACUGg -3'
miRNA:   3'- -GUCCAUAGCUUGCCCAGCCGCGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.