miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24212 5' -53.5 NC_005263.2 + 3540 0.67 0.735486
Target:  5'- cGCGGCcgGCGUCGuccAUGUccucgccaagcgUCGCGGCg -3'
miRNA:   3'- cCGUCG--CGCAGCucuUACA------------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 29060 0.67 0.724722
Target:  5'- cGCGGCGCGuccUCGGGGcgGcgCGCa-- -3'
miRNA:   3'- cCGUCGCGC---AGCUCUuaCaaGCGcug -5'
24212 5' -53.5 NC_005263.2 + 31017 0.67 0.713863
Target:  5'- aGCAGUGCGgCGAGG-----CGCGGCg -3'
miRNA:   3'- cCGUCGCGCaGCUCUuacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 22496 0.67 0.702921
Target:  5'- cGGCGGCG-GcCGGcGGcgGUUCgGCGGCu -3'
miRNA:   3'- -CCGUCGCgCaGCU-CUuaCAAG-CGCUG- -5'
24212 5' -53.5 NC_005263.2 + 36280 0.67 0.702921
Target:  5'- uGGCAGCGCuacuUCGAcac-GUUCGCGcGCg -3'
miRNA:   3'- -CCGUCGCGc---AGCUcuuaCAAGCGC-UG- -5'
24212 5' -53.5 NC_005263.2 + 3194 0.67 0.702921
Target:  5'- cGCuGCGCGUCGGcGAg---CGCGGCc -3'
miRNA:   3'- cCGuCGCGCAGCUcUUacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 24348 0.67 0.702921
Target:  5'- cGGC-GCGCcgacgcccguaGUCGGGGAUGg-CGCGAa -3'
miRNA:   3'- -CCGuCGCG-----------CAGCUCUUACaaGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 45668 0.68 0.669712
Target:  5'- uGGCcgcguuGCGCcagaaacaacucGUCGAGcgGAUGUgUCGCGGCg -3'
miRNA:   3'- -CCGu-----CGCG------------CAGCUC--UUACA-AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 30655 0.68 0.669712
Target:  5'- aGGCGGCuGuCGUCGAGu---UUCGaCGGCg -3'
miRNA:   3'- -CCGUCG-C-GCAGCUCuuacAAGC-GCUG- -5'
24212 5' -53.5 NC_005263.2 + 29014 0.68 0.667482
Target:  5'- cGGCAGUGCGUUGcgcac---CGCGACg -3'
miRNA:   3'- -CCGUCGCGCAGCucuuacaaGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 42133 0.68 0.658553
Target:  5'- uGCuGCGCGaCGAGGcGUG-UCGCGAg -3'
miRNA:   3'- cCGuCGCGCaGCUCU-UACaAGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 8853 0.68 0.658553
Target:  5'- aGGCGGCGCG-CGGGG-----CGCGAg -3'
miRNA:   3'- -CCGUCGCGCaGCUCUuacaaGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 27139 0.68 0.64737
Target:  5'- cGCAGcCGCGUCGGcGAUG-UC-CGACa -3'
miRNA:   3'- cCGUC-GCGCAGCUcUUACaAGcGCUG- -5'
24212 5' -53.5 NC_005263.2 + 30397 0.68 0.636171
Target:  5'- cGGCGGCGCucGUCGGGA----UCG-GACa -3'
miRNA:   3'- -CCGUCGCG--CAGCUCUuacaAGCgCUG- -5'
24212 5' -53.5 NC_005263.2 + 42702 0.69 0.624969
Target:  5'- cGCAGgGCGUUGcAGAGggcggccGUUUGUGACu -3'
miRNA:   3'- cCGUCgCGCAGC-UCUUa------CAAGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 33172 0.69 0.624969
Target:  5'- uGCAuCGCGaCGGGGAUGUcgagugguUCGCGAUc -3'
miRNA:   3'- cCGUcGCGCaGCUCUUACA--------AGCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 17502 0.69 0.624969
Target:  5'- cGCGGCGCGUCGAucGAucag--GCGGCg -3'
miRNA:   3'- cCGUCGCGCAGCU--CUuacaagCGCUG- -5'
24212 5' -53.5 NC_005263.2 + 26205 0.69 0.613774
Target:  5'- cGGCcGCGCGaugCGGcGGccGUUCGCGAa -3'
miRNA:   3'- -CCGuCGCGCa--GCU-CUuaCAAGCGCUg -5'
24212 5' -53.5 NC_005263.2 + 8734 0.69 0.613774
Target:  5'- uGCGGUGCGUCGuAGAAg---CGCGcCg -3'
miRNA:   3'- cCGUCGCGCAGC-UCUUacaaGCGCuG- -5'
24212 5' -53.5 NC_005263.2 + 30216 0.69 0.602595
Target:  5'- cGGC-GCGCcgccgGUCGAcuGAucGUUCGCGGCg -3'
miRNA:   3'- -CCGuCGCG-----CAGCU--CUuaCAAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.