miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 3' -57.1 NC_005263.2 + 35546 0.67 0.539267
Target:  5'- cGCGCGggcggGCgcuacggCGCCG-CCGGCcgCcGCGa -3'
miRNA:   3'- -CGCGCa----UGa------GCGGCaGGCCGa-GuUGC- -5'
24215 3' -57.1 NC_005263.2 + 43913 0.67 0.539267
Target:  5'- cGCGCGUACUgcuucacguucCGaCUGcCUGGCaugUCGACGg -3'
miRNA:   3'- -CGCGCAUGA-----------GC-GGCaGGCCG---AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 32991 0.67 0.539267
Target:  5'- cGCuGCGUAUUCGCgCG--CGGCcUCGACGu -3'
miRNA:   3'- -CG-CGCAUGAGCG-GCagGCCG-AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 17317 0.67 0.539267
Target:  5'- cGCGCGaAUUCGgcCCGgcgCCGGUggcuUCGACGu -3'
miRNA:   3'- -CGCGCaUGAGC--GGCa--GGCCG----AGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 1924 0.67 0.528778
Target:  5'- cGCGCGUcugcACgagcgCGCCGgcaCCGGCgacgcCGGCa -3'
miRNA:   3'- -CGCGCA----UGa----GCGGCa--GGCCGa----GUUGc -5'
24215 3' -57.1 NC_005263.2 + 44898 0.67 0.528778
Target:  5'- gGgGCGggcgGCg-GCCGggCCGGCUCAcCGg -3'
miRNA:   3'- -CgCGCa---UGagCGGCa-GGCCGAGUuGC- -5'
24215 3' -57.1 NC_005263.2 + 17438 0.68 0.508035
Target:  5'- -aGCGgccaGCUCGCCGUCgaaaCUCGACGa -3'
miRNA:   3'- cgCGCa---UGAGCGGCAGgcc-GAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 26103 0.68 0.507006
Target:  5'- aGCGCGUccugguacgcgccGCUCGaaGUCagCGGgUCGACGu -3'
miRNA:   3'- -CGCGCA-------------UGAGCggCAG--GCCgAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 42240 0.68 0.497792
Target:  5'- gGCcCGUAC-CGCC-UgCGGCUCGACu -3'
miRNA:   3'- -CGcGCAUGaGCGGcAgGCCGAGUUGc -5'
24215 3' -57.1 NC_005263.2 + 26867 0.68 0.497792
Target:  5'- gGCGCGcACcgCGCCGUcgaugcgaaagCCGG-UCGACGa -3'
miRNA:   3'- -CGCGCaUGa-GCGGCA-----------GGCCgAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 24067 0.68 0.497792
Target:  5'- aGCGCGaACccggacacgUCGaCCGaUCCGGC-CGGCGg -3'
miRNA:   3'- -CGCGCaUG---------AGC-GGC-AGGCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 16414 0.68 0.497792
Target:  5'- gGUGCgGUACUCGgCGUCggcgcUGGCgCGGCGg -3'
miRNA:   3'- -CGCG-CAUGAGCgGCAG-----GCCGaGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 29991 0.68 0.497792
Target:  5'- aGCGCGUagaACUCgGCCGgcuucgUCGGCUUGAg- -3'
miRNA:   3'- -CGCGCA---UGAG-CGGCa-----GGCCGAGUUgc -5'
24215 3' -57.1 NC_005263.2 + 31628 0.68 0.487644
Target:  5'- cGCGCG-GCgcagCGCCGUCuCGGUguucgUCAguGCGa -3'
miRNA:   3'- -CGCGCaUGa---GCGGCAG-GCCG-----AGU--UGC- -5'
24215 3' -57.1 NC_005263.2 + 11180 0.68 0.487644
Target:  5'- aGCGCGU----GCCGUCCGGUaUAGCc -3'
miRNA:   3'- -CGCGCAugagCGGCAGGCCGaGUUGc -5'
24215 3' -57.1 NC_005263.2 + 9887 0.68 0.467647
Target:  5'- gGCGCuuucaUGCUCGUCGUC-GGCgcgCGGCGu -3'
miRNA:   3'- -CGCGc----AUGAGCGGCAGgCCGa--GUUGC- -5'
24215 3' -57.1 NC_005263.2 + 38570 0.68 0.467647
Target:  5'- uGUGCGacGCgUUGCCGUCCGacgcGCUCAcgGCGa -3'
miRNA:   3'- -CGCGCa-UG-AGCGGCAGGC----CGAGU--UGC- -5'
24215 3' -57.1 NC_005263.2 + 32562 0.68 0.467647
Target:  5'- cGCGCuUACUCGCCGa--GGUUCAggacaACGa -3'
miRNA:   3'- -CGCGcAUGAGCGGCaggCCGAGU-----UGC- -5'
24215 3' -57.1 NC_005263.2 + 31518 0.69 0.457807
Target:  5'- cGCGCGaGCccggcgaacgcgUCGCCG-CCGGcCUUGGCGu -3'
miRNA:   3'- -CGCGCaUG------------AGCGGCaGGCC-GAGUUGC- -5'
24215 3' -57.1 NC_005263.2 + 8521 0.69 0.44808
Target:  5'- aCGUGgcgACcuUCGUCGU-CGGCUCGGCGg -3'
miRNA:   3'- cGCGCa--UG--AGCGGCAgGCCGAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.