miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24215 5' -56.6 NC_005263.2 + 43250 0.67 0.494669
Target:  5'- -aCGCgCUCGGCGuAACgcucgauuGGCUGUGcGgGCg -3'
miRNA:   3'- aaGCG-GAGCCGC-UUG--------UCGACAU-CgCG- -5'
24215 5' -56.6 NC_005263.2 + 31329 0.67 0.493623
Target:  5'- -aCGUC-CGGCGAuacgccgGCGGCcGUcaGGCGCg -3'
miRNA:   3'- aaGCGGaGCCGCU-------UGUCGaCA--UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 22100 0.67 0.488412
Target:  5'- --aGCCauUCGGCGAagugccgcgcgagugGCAGCUGaaAGCGUu -3'
miRNA:   3'- aagCGG--AGCCGCU---------------UGUCGACa-UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 26055 0.67 0.484262
Target:  5'- aUCGUCgCGGC-AACAGCcggGUuGCGCg -3'
miRNA:   3'- aAGCGGaGCCGcUUGUCGa--CAuCGCG- -5'
24215 5' -56.6 NC_005263.2 + 21796 0.67 0.484262
Target:  5'- -aCGCCgacCGGCcuGCAGCUGgccGGCGa -3'
miRNA:   3'- aaGCGGa--GCCGcuUGUCGACa--UCGCg -5'
24215 5' -56.6 NC_005263.2 + 28111 0.68 0.463772
Target:  5'- aUCGCgUCGuuG-ACGGCaGUGGCGCc -3'
miRNA:   3'- aAGCGgAGCcgCuUGUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 40235 0.68 0.463772
Target:  5'- -cCGUCagaagaagUCGGCGGGCAcCUGgGGCGCg -3'
miRNA:   3'- aaGCGG--------AGCCGCUUGUcGACaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 7431 0.68 0.463772
Target:  5'- -cCGCUUCGGCcuGAuacCAGC-GUGGCGUc -3'
miRNA:   3'- aaGCGGAGCCG--CUu--GUCGaCAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 11957 0.68 0.463772
Target:  5'- gUUCGCCUCGaGCGcGC-GCcGUAcuuGCGCu -3'
miRNA:   3'- -AAGCGGAGC-CGCuUGuCGaCAU---CGCG- -5'
24215 5' -56.6 NC_005263.2 + 18610 0.68 0.453698
Target:  5'- -aCGCCgcagCGGCGuucGCGGCagGUGGCa- -3'
miRNA:   3'- aaGCGGa---GCCGCu--UGUCGa-CAUCGcg -5'
24215 5' -56.6 NC_005263.2 + 32245 0.68 0.447711
Target:  5'- gUUCGCCUgcaucugcugaaucgCGGCGAGCcacGCga-AGCGCg -3'
miRNA:   3'- -AAGCGGA---------------GCCGCUUGu--CGacaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 27661 0.68 0.443744
Target:  5'- -aCGUCUCGGCGGcggcaagcACGGCcgccuucuUGUGcGCGCc -3'
miRNA:   3'- aaGCGGAGCCGCU--------UGUCG--------ACAU-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 3394 0.68 0.428077
Target:  5'- gUCGCCgucguugcgggcacuUCGGUaaaGAACuGCUGcGGCGCc -3'
miRNA:   3'- aAGCGG---------------AGCCG---CUUGuCGACaUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 19387 0.68 0.424212
Target:  5'- gUCaGCCUCGGCGGcgcgcaguACGGCaac-GCGCg -3'
miRNA:   3'- aAG-CGGAGCCGCU--------UGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 16596 0.68 0.424212
Target:  5'- gUUCGCCgggcucgCGcGCGAGCAGCaGcucGCGCc -3'
miRNA:   3'- -AAGCGGa------GC-CGCUUGUCGaCau-CGCG- -5'
24215 5' -56.6 NC_005263.2 + 7120 0.69 0.414641
Target:  5'- uUUCGCCUgcCGuGCGAcCGaCUGUGGCGUc -3'
miRNA:   3'- -AAGCGGA--GC-CGCUuGUcGACAUCGCG- -5'
24215 5' -56.6 NC_005263.2 + 29886 0.69 0.405203
Target:  5'- gUCGCg-CGGcCGGACAGCgUGUGauacuGCGCg -3'
miRNA:   3'- aAGCGgaGCC-GCUUGUCG-ACAU-----CGCG- -5'
24215 5' -56.6 NC_005263.2 + 27144 0.69 0.395902
Target:  5'- -cCGCgUCGGCGAuguccgACAGCgc--GCGCg -3'
miRNA:   3'- aaGCGgAGCCGCU------UGUCGacauCGCG- -5'
24215 5' -56.6 NC_005263.2 + 47724 0.69 0.378614
Target:  5'- -aCGCgCUCGGCaauucugucggccuGCAGCUGUucaaAGCGCc -3'
miRNA:   3'- aaGCG-GAGCCGcu------------UGUCGACA----UCGCG- -5'
24215 5' -56.6 NC_005263.2 + 10397 0.7 0.360105
Target:  5'- --gGCCggcCGGCGAGCGGgUccGGCGCg -3'
miRNA:   3'- aagCGGa--GCCGCUUGUCgAcaUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.