miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24216 3' -51.4 NC_005263.2 + 43876 0.66 0.915662
Target:  5'- cCUGACgCCGaCGUUuuCGAgcGUCGACGc -3'
miRNA:   3'- -GGCUG-GGUaGCAGu-GCUuuCAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 40739 0.66 0.915662
Target:  5'- aCCaACCCgAUCGcCGCGAucGUCaccGGCGg -3'
miRNA:   3'- -GGcUGGG-UAGCaGUGCUuuCAG---CUGC- -5'
24216 3' -51.4 NC_005263.2 + 31894 0.66 0.915662
Target:  5'- gCCGugcgUCCAguucgagCGUCACGAccaguucGUCGACGa -3'
miRNA:   3'- -GGCu---GGGUa------GCAGUGCUuu-----CAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 45614 0.66 0.91503
Target:  5'- cCCGAUCUcgaggcagcgucgAUCGUCACGAAcaacgCGGCu -3'
miRNA:   3'- -GGCUGGG-------------UAGCAGUGCUUuca--GCUGc -5'
24216 3' -51.4 NC_005263.2 + 2765 0.66 0.91503
Target:  5'- gCCGugCCGgucguguUCGUCACGAccgugAAG-CGAUu -3'
miRNA:   3'- -GGCugGGU-------AGCAGUGCU-----UUCaGCUGc -5'
24216 3' -51.4 NC_005263.2 + 20170 0.66 0.909212
Target:  5'- uCCGGCUCAUCGacgacgagCGCGccGGgCGACGc -3'
miRNA:   3'- -GGCUGGGUAGCa-------GUGCuuUCaGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 10307 0.66 0.909212
Target:  5'- gCGcGCCCGUCGUCaACGAGcgccacauGGUUGccACGg -3'
miRNA:   3'- gGC-UGGGUAGCAG-UGCUU--------UCAGC--UGC- -5'
24216 3' -51.4 NC_005263.2 + 27076 0.66 0.905207
Target:  5'- gCCGcuACCCAUCGUCuCGAccuggaugaucgccuGAaacgccggcacGUCGACGc -3'
miRNA:   3'- -GGC--UGGGUAGCAGuGCU---------------UU-----------CAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 20656 0.66 0.895477
Target:  5'- gCCGcGCCgcUCGUCGCGGccGUCGAa- -3'
miRNA:   3'- -GGC-UGGguAGCAGUGCUuuCAGCUgc -5'
24216 3' -51.4 NC_005263.2 + 22203 0.67 0.8882
Target:  5'- gCGACCguuaCGUaCGUCGCGGccGUCGcCGg -3'
miRNA:   3'- gGCUGG----GUA-GCAGUGCUuuCAGCuGC- -5'
24216 3' -51.4 NC_005263.2 + 28853 0.67 0.8882
Target:  5'- aUCGAUCUgcgaGUCGUCGCGccaGAAGcCGGCu -3'
miRNA:   3'- -GGCUGGG----UAGCAGUGC---UUUCaGCUGc -5'
24216 3' -51.4 NC_005263.2 + 41302 0.67 0.880656
Target:  5'- aUCGACaCCGaaggCGUCaagACGAAGGgCGGCGa -3'
miRNA:   3'- -GGCUG-GGUa---GCAG---UGCUUUCaGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 38683 0.67 0.87285
Target:  5'- aUCGGCCCGggCGgCACGGgcAAGUCGuACu -3'
miRNA:   3'- -GGCUGGGUa-GCaGUGCU--UUCAGC-UGc -5'
24216 3' -51.4 NC_005263.2 + 9207 0.67 0.86479
Target:  5'- cCCGGCUUGcUCGUgACGGugccGUCGGCGu -3'
miRNA:   3'- -GGCUGGGU-AGCAgUGCUuu--CAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 28949 0.67 0.855637
Target:  5'- aCGGCCCAUgcggucggaucggUGUCGCGGAAuUCGgGCGc -3'
miRNA:   3'- gGCUGGGUA-------------GCAGUGCUUUcAGC-UGC- -5'
24216 3' -51.4 NC_005263.2 + 31908 0.68 0.847933
Target:  5'- aCCGAUCaaagccucgcUCGUCGCGGAcccGUCGACc -3'
miRNA:   3'- -GGCUGGgu--------AGCAGUGCUUu--CAGCUGc -5'
24216 3' -51.4 NC_005263.2 + 30229 0.68 0.845323
Target:  5'- gUCGACUgAUCGUUcgcgGCGAAGcgugcgcgguagucGUCGGCGa -3'
miRNA:   3'- -GGCUGGgUAGCAG----UGCUUU--------------CAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 2030 0.68 0.839153
Target:  5'- aCGGCCgCAUCGaUCACG----UCGACGc -3'
miRNA:   3'- gGCUGG-GUAGC-AGUGCuuucAGCUGC- -5'
24216 3' -51.4 NC_005263.2 + 33953 0.68 0.839153
Target:  5'- gCCGGCCCGaaGUCGCcAAGG-CGGCc -3'
miRNA:   3'- -GGCUGGGUagCAGUGcUUUCaGCUGc -5'
24216 3' -51.4 NC_005263.2 + 14082 0.68 0.833778
Target:  5'- gCCGGCCCAugUCGgcugguaccggcugCGCGgcGGUCGcCGu -3'
miRNA:   3'- -GGCUGGGU--AGCa-------------GUGCuuUCAGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.