miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24216 5' -51.3 NC_005263.2 + 23093 0.66 0.903569
Target:  5'- uGGCGUCGU--UCGAUcaguggGUCGAUccGGCa -3'
miRNA:   3'- -CCGCGGCGuuGGCUA------CAGCUAuaUCG- -5'
24216 5' -51.3 NC_005263.2 + 41101 0.66 0.903569
Target:  5'- cGCGCCGCcaauCCGcacGUG-CGGUuuguUGGCa -3'
miRNA:   3'- cCGCGGCGuu--GGC---UACaGCUAu---AUCG- -5'
24216 5' -51.3 NC_005263.2 + 28069 0.66 0.903569
Target:  5'- -cCGCCGCGAUCcauugcguGcgGUUGAUGUaAGCg -3'
miRNA:   3'- ccGCGGCGUUGG--------CuaCAGCUAUA-UCG- -5'
24216 5' -51.3 NC_005263.2 + 24317 0.66 0.903569
Target:  5'- cGCGUCGCAuCgGcgGUCGuaacgGGCa -3'
miRNA:   3'- cCGCGGCGUuGgCuaCAGCuaua-UCG- -5'
24216 5' -51.3 NC_005263.2 + 1951 0.66 0.903569
Target:  5'- cGGCgacGCCgGCAACCGc-GUCGAUcu-GCu -3'
miRNA:   3'- -CCG---CGG-CGUUGGCuaCAGCUAuauCG- -5'
24216 5' -51.3 NC_005263.2 + 18607 0.66 0.903569
Target:  5'- cGGaCGCCGCAGCgGcguucgCGGcagGUGGCa -3'
miRNA:   3'- -CC-GCGGCGUUGgCuaca--GCUa--UAUCG- -5'
24216 5' -51.3 NC_005263.2 + 14162 0.66 0.903569
Target:  5'- cGGC-CCGCAguugucGCCGuucuAUG-CGAUcgGGCa -3'
miRNA:   3'- -CCGcGGCGU------UGGC----UACaGCUAuaUCG- -5'
24216 5' -51.3 NC_005263.2 + 22541 0.66 0.903569
Target:  5'- gGGCGgCGCGgacGCCGAcGUCGcgcucGCg -3'
miRNA:   3'- -CCGCgGCGU---UGGCUaCAGCuauauCG- -5'
24216 5' -51.3 NC_005263.2 + 17144 0.66 0.903569
Target:  5'- cGGCGaaGCggUCGAcGUCGcgGUguucGGCu -3'
miRNA:   3'- -CCGCggCGuuGGCUaCAGCuaUA----UCG- -5'
24216 5' -51.3 NC_005263.2 + 15195 0.66 0.903569
Target:  5'- cGCGCCGCG--CGAcGUCGGca-AGCg -3'
miRNA:   3'- cCGCGGCGUugGCUaCAGCUauaUCG- -5'
24216 5' -51.3 NC_005263.2 + 17094 0.66 0.896478
Target:  5'- uGGUGCCcggGCGcCCGcGUGUUGAUcGUGGUc -3'
miRNA:   3'- -CCGCGG---CGUuGGC-UACAGCUA-UAUCG- -5'
24216 5' -51.3 NC_005263.2 + 13074 0.66 0.896478
Target:  5'- gGGCGUgucuGCCGGUGUCGGac-GGCa -3'
miRNA:   3'- -CCGCGgcguUGGCUACAGCUauaUCG- -5'
24216 5' -51.3 NC_005263.2 + 29356 0.66 0.896478
Target:  5'- cGCGCCGCcuaCGAUcgcGcCGAUcUGGCg -3'
miRNA:   3'- cCGCGGCGuugGCUA---CaGCUAuAUCG- -5'
24216 5' -51.3 NC_005263.2 + 24006 0.66 0.896478
Target:  5'- aGGCGCCGCGcugcaaaguGCCGAcGcgcUCGGc--AGCu -3'
miRNA:   3'- -CCGCGGCGU---------UGGCUaC---AGCUauaUCG- -5'
24216 5' -51.3 NC_005263.2 + 10117 0.66 0.893562
Target:  5'- cGUGaCGCGACCGAUGUCcuucacguGCa -3'
miRNA:   3'- cCGCgGCGUUGGCUACAGcuauau--CG- -5'
24216 5' -51.3 NC_005263.2 + 44692 0.66 0.889105
Target:  5'- cGGCGCCGCAgcaguucuuuACCGAaGUgcccgcaaCGAc--GGCg -3'
miRNA:   3'- -CCGCGGCGU----------UGGCUaCA--------GCUauaUCG- -5'
24216 5' -51.3 NC_005263.2 + 45433 0.66 0.889105
Target:  5'- cGGCGCgacacUGCAggcuGCCGGUGUCGccgccgAUAcGCc -3'
miRNA:   3'- -CCGCG-----GCGU----UGGCUACAGCua----UAU-CG- -5'
24216 5' -51.3 NC_005263.2 + 32613 0.66 0.889105
Target:  5'- aGCGUCuugaGCucGCgGAUGUCGGUAggcAGCa -3'
miRNA:   3'- cCGCGG----CGu-UGgCUACAGCUAUa--UCG- -5'
24216 5' -51.3 NC_005263.2 + 10346 0.66 0.889105
Target:  5'- aGGCGCgGCAGCU--UGcCGAcaUcgAGCa -3'
miRNA:   3'- -CCGCGgCGUUGGcuACaGCU--AuaUCG- -5'
24216 5' -51.3 NC_005263.2 + 12168 0.66 0.888352
Target:  5'- aGCGUcaacgauCGCGGCCG-UGUCGcgAUgaAGCg -3'
miRNA:   3'- cCGCG-------GCGUUGGCuACAGCuaUA--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.