miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24218 5' -53.6 NC_005263.2 + 8716 0.66 0.761945
Target:  5'- gGUCGGccgcguccaucGCGUAC-UCGGCGAGCgGgGUc -3'
miRNA:   3'- -UAGCC-----------CGCAUGuAGCUGUUUGgCgCG- -5'
24218 5' -53.6 NC_005263.2 + 36670 0.66 0.761945
Target:  5'- cAUUGGGCGaccugGCAgcauUCGAgCGcgggcaaggAGCCGCGCc -3'
miRNA:   3'- -UAGCCCGCa----UGU----AGCU-GU---------UUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 33446 0.66 0.761945
Target:  5'- cGUCGGcGUGUgggGCAagaCGGCGGACgaGCGCg -3'
miRNA:   3'- -UAGCC-CGCA---UGUa--GCUGUUUGg-CGCG- -5'
24218 5' -53.6 NC_005263.2 + 17247 0.66 0.755664
Target:  5'- cUCGcGGUGUuccagccgcgucggaACAUCGGCGAACC-CGg -3'
miRNA:   3'- uAGC-CCGCA---------------UGUAGCUGUUUGGcGCg -5'
24218 5' -53.6 NC_005263.2 + 34910 0.66 0.751451
Target:  5'- -cUGGcGCGaAUGUCGACcuguGAugCGCGCg -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUG----UUugGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 26319 0.66 0.751451
Target:  5'- -gCGGGCGaUGCG-CGAguGAUuCGCGCc -3'
miRNA:   3'- uaGCCCGC-AUGUaGCUguUUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 47176 0.66 0.750394
Target:  5'- -gCGGGUGccaacccguucgaUGCGUCGACGAguaACC-CGCc -3'
miRNA:   3'- uaGCCCGC-------------AUGUAGCUGUU---UGGcGCG- -5'
24218 5' -53.6 NC_005263.2 + 41327 0.66 0.74083
Target:  5'- --aGGGCGgcgACuUCGACGAgGCCGaGCu -3'
miRNA:   3'- uagCCCGCa--UGuAGCUGUU-UGGCgCG- -5'
24218 5' -53.6 NC_005263.2 + 25886 0.66 0.74083
Target:  5'- -cCGGGCcgACGcCGGCGAcgGCCGCGa -3'
miRNA:   3'- uaGCCCGcaUGUaGCUGUU--UGGCGCg -5'
24218 5' -53.6 NC_005263.2 + 41437 0.66 0.74083
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1627 0.67 0.734402
Target:  5'- gGUCGaacGCGU-CGUCGGCGGcguagcccuggaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 24699 0.67 0.730096
Target:  5'- --aGcGCGUugAUCGACGGGCaaucgcauCGCGCg -3'
miRNA:   3'- uagCcCGCAugUAGCUGUUUG--------GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 39336 0.67 0.730096
Target:  5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3'
miRNA:   3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1979 0.67 0.730096
Target:  5'- cUCGGGUGcccuuUGCuccCGACuguccuAGGCCGCGCc -3'
miRNA:   3'- uAGCCCGC-----AUGua-GCUG------UUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 20538 0.67 0.719259
Target:  5'- uGUCgGGGCGUACAaccUCGccGCGAcGCuCGUGCc -3'
miRNA:   3'- -UAG-CCCGCAUGU---AGC--UGUU-UG-GCGCG- -5'
24218 5' -53.6 NC_005263.2 + 1282 0.67 0.719259
Target:  5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 19432 0.67 0.719259
Target:  5'- uUC-GGCGUGCcgcUCGAuacgaugaacCAGAUCGCGCg -3'
miRNA:   3'- uAGcCCGCAUGu--AGCU----------GUUUGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 30307 0.67 0.718171
Target:  5'- -cCGGGCGcggccgGCGUCuuGACGAcgaucgauugcgaAUCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUAG--CUGUU-------------UGGCGCG- -5'
24218 5' -53.6 NC_005263.2 + 27934 0.67 0.708333
Target:  5'- -cCGGcGCGcucuCGUCGAUGAGCCggacgGCGCg -3'
miRNA:   3'- uaGCC-CGCau--GUAGCUGUUUGG-----CGCG- -5'
24218 5' -53.6 NC_005263.2 + 18521 0.67 0.708333
Target:  5'- gAUC-GGCG-GCGUCGAC--ACCGCGa -3'
miRNA:   3'- -UAGcCCGCaUGUAGCUGuuUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.