miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24220 3' -53.8 NC_005263.2 + 33658 0.65 0.773102
Target:  5'- cGCucgGCUCGAaagaggcGCGCgCGCACGccguCGCAu -3'
miRNA:   3'- -CGua-CGAGCU-------CGCG-GUGUGCau--GUGU- -5'
24220 3' -53.8 NC_005263.2 + 36196 0.66 0.763765
Target:  5'- ---cGCUUcguugacgaaGAGCGCCuGCACGaGCACGa -3'
miRNA:   3'- cguaCGAG----------CUCGCGG-UGUGCaUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 38314 0.66 0.760627
Target:  5'- uGCcUGUUCGAugagaucgaugcgcGCGCgAC-CGUGCACGc -3'
miRNA:   3'- -CGuACGAGCU--------------CGCGgUGuGCAUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 41257 0.66 0.753257
Target:  5'- cGCAauccGCUCGAugGCCGCGCagugcaGUGCGCAa -3'
miRNA:   3'- -CGUa---CGAGCUcgCGGUGUG------CAUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 19924 0.66 0.753257
Target:  5'- gGCAUGCagaaGGCGCCGCgcuauucgACGUcggGCACAc -3'
miRNA:   3'- -CGUACGagc-UCGCGGUG--------UGCA---UGUGU- -5'
24220 3' -53.8 NC_005263.2 + 15102 0.66 0.752199
Target:  5'- -aGUGCaucaacgUCGAG-GCCGCGCGcgaaUACGCAg -3'
miRNA:   3'- cgUACG-------AGCUCgCGGUGUGC----AUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 43574 0.66 0.752199
Target:  5'- cGUcgGCac-AGCGCCGCACGUcgguagagaauguGCGCGa -3'
miRNA:   3'- -CGuaCGagcUCGCGGUGUGCA-------------UGUGU- -5'
24220 3' -53.8 NC_005263.2 + 23412 0.66 0.742619
Target:  5'- gGCAcGUUCGGcGCGCCGC-CGUuaccgGCGCc -3'
miRNA:   3'- -CGUaCGAGCU-CGCGGUGuGCA-----UGUGu -5'
24220 3' -53.8 NC_005263.2 + 37757 0.66 0.742619
Target:  5'- --uUGCUCGAugucggcaaGCuGCCGCGCcUGCGCGa -3'
miRNA:   3'- cguACGAGCU---------CG-CGGUGUGcAUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 31090 0.66 0.742619
Target:  5'- cGCGcUGCUCGAGCG--AUACGaACGCu -3'
miRNA:   3'- -CGU-ACGAGCUCGCggUGUGCaUGUGu -5'
24220 3' -53.8 NC_005263.2 + 37365 0.66 0.741548
Target:  5'- cCGUGCUCGAugcgcucgagucuGCGUCGCccuggcugcgcgACGUGCAUc -3'
miRNA:   3'- cGUACGAGCU-------------CGCGGUG------------UGCAUGUGu -5'
24220 3' -53.8 NC_005263.2 + 9649 0.66 0.736179
Target:  5'- gGCuUGCgcugUCGAGCGCaaugucgccgccgaGCACGUaACGCAc -3'
miRNA:   3'- -CGuACG----AGCUCGCGg-------------UGUGCA-UGUGU- -5'
24220 3' -53.8 NC_005263.2 + 9704 0.66 0.731864
Target:  5'- uGCcUGCUCGAccgcuGCGgCGCGCuUGCGCu -3'
miRNA:   3'- -CGuACGAGCU-----CGCgGUGUGcAUGUGu -5'
24220 3' -53.8 NC_005263.2 + 10302 0.67 0.703441
Target:  5'- cGgAUGCgcgcccgucgucaaCGAGCGCCACAUGguugcCACGg -3'
miRNA:   3'- -CgUACGa-------------GCUCGCGGUGUGCau---GUGU- -5'
24220 3' -53.8 NC_005263.2 + 43377 0.67 0.69902
Target:  5'- gGCGUGCUCGcgGGCGCg--ACGUACcCGg -3'
miRNA:   3'- -CGUACGAGC--UCGCGgugUGCAUGuGU- -5'
24220 3' -53.8 NC_005263.2 + 13849 0.67 0.69902
Target:  5'- cGCGguaCUCGGGCaGCUGCGCGagcaGCACAa -3'
miRNA:   3'- -CGUac-GAGCUCG-CGGUGUGCa---UGUGU- -5'
24220 3' -53.8 NC_005263.2 + 14041 0.67 0.687919
Target:  5'- uUcgGCcaCGGGCGCCGCGuCGaGCGCAu -3'
miRNA:   3'- cGuaCGa-GCUCGCGGUGU-GCaUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 2698 0.67 0.687919
Target:  5'- cGCGgccGCUCGGcaggugcauGCGCagCGCGCGUGCAUc -3'
miRNA:   3'- -CGUa--CGAGCU---------CGCG--GUGUGCAUGUGu -5'
24220 3' -53.8 NC_005263.2 + 12107 0.67 0.687919
Target:  5'- gGCAUGCgcagCG-GCGCgCGCGCcauUACGCGc -3'
miRNA:   3'- -CGUACGa---GCuCGCG-GUGUGc--AUGUGU- -5'
24220 3' -53.8 NC_005263.2 + 26093 0.67 0.676763
Target:  5'- -gAUGCggcCGAGCGCgucCugGUACGCGc -3'
miRNA:   3'- cgUACGa--GCUCGCGgu-GugCAUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.