miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24220 5' -62 NC_005263.2 + 4473 0.66 0.364137
Target:  5'- -uCGUCCGU-GCGCGCgGgucGGCGuGCUu -3'
miRNA:   3'- guGCAGGUAgCGCGCGgC---CCGCuCGA- -5'
24220 5' -62 NC_005263.2 + 37221 0.66 0.364137
Target:  5'- aUACG-CCGcucacgaCGCGCGCCGGuGcCGAGUUc -3'
miRNA:   3'- -GUGCaGGUa------GCGCGCGGCC-C-GCUCGA- -5'
24220 5' -62 NC_005263.2 + 32316 0.66 0.364137
Target:  5'- uCACGUCgAUCGa-CGaCGGGCGAcGCa -3'
miRNA:   3'- -GUGCAGgUAGCgcGCgGCCCGCU-CGa -5'
24220 5' -62 NC_005263.2 + 3332 0.66 0.364137
Target:  5'- aACGUCUG-CGCGcCGCCGGcGCcgcgcgcggucGAGCg -3'
miRNA:   3'- gUGCAGGUaGCGC-GCGGCC-CG-----------CUCGa -5'
24220 5' -62 NC_005263.2 + 6190 0.66 0.364137
Target:  5'- gCAgGUCgAauUCGgGCuGCuCGGGCGAGUUg -3'
miRNA:   3'- -GUgCAGgU--AGCgCG-CG-GCCCGCUCGA- -5'
24220 5' -62 NC_005263.2 + 6255 0.66 0.355889
Target:  5'- gGCG-CgGUCGUGcCGUCGGGC-AGCUu -3'
miRNA:   3'- gUGCaGgUAGCGC-GCGGCCCGcUCGA- -5'
24220 5' -62 NC_005263.2 + 24787 0.66 0.355889
Target:  5'- gGCGUCgGcgGCuCGCCGGGCGucGGCg -3'
miRNA:   3'- gUGCAGgUagCGcGCGGCCCGC--UCGa -5'
24220 5' -62 NC_005263.2 + 3735 0.66 0.355072
Target:  5'- gCAUGUCCAuuUCGaaguacgccugcuCGCGCgCGGGC-AGCg -3'
miRNA:   3'- -GUGCAGGU--AGC-------------GCGCG-GCCCGcUCGa -5'
24220 5' -62 NC_005263.2 + 1925 0.66 0.347774
Target:  5'- gCGCGUCUgcacgaGCGCGCCGgcaccGGCGAcGCc -3'
miRNA:   3'- -GUGCAGGuag---CGCGCGGC-----CCGCU-CGa -5'
24220 5' -62 NC_005263.2 + 3179 0.66 0.339792
Target:  5'- gCGCGgaauaacugCCGcUGCGCGUC-GGCGAGCg -3'
miRNA:   3'- -GUGCa--------GGUaGCGCGCGGcCCGCUCGa -5'
24220 5' -62 NC_005263.2 + 46101 0.66 0.339792
Target:  5'- gACGUCggguauCAUC-CGCGCCGGcGUGAcGCUu -3'
miRNA:   3'- gUGCAG------GUAGcGCGCGGCC-CGCU-CGA- -5'
24220 5' -62 NC_005263.2 + 19689 0.66 0.324228
Target:  5'- gACGUUCAcgCGCGUGCCGGcGCcuccggGGGUa -3'
miRNA:   3'- gUGCAGGUa-GCGCGCGGCC-CG------CUCGa -5'
24220 5' -62 NC_005263.2 + 27979 0.66 0.324228
Target:  5'- -cCGUaCCGUCGCGCuuGCCGuaacccugcgcGGCGAcGCUg -3'
miRNA:   3'- guGCA-GGUAGCGCG--CGGC-----------CCGCU-CGA- -5'
24220 5' -62 NC_005263.2 + 10891 0.67 0.316648
Target:  5'- gCGCGUCgugagcggcgUAUCGcCGCGCUGGGgGAuGCc -3'
miRNA:   3'- -GUGCAG----------GUAGC-GCGCGGCCCgCU-CGa -5'
24220 5' -62 NC_005263.2 + 27679 0.67 0.294712
Target:  5'- gCACGgccgCCuucuugUGCGCGCCGGcGCcGGCg -3'
miRNA:   3'- -GUGCa---GGua----GCGCGCGGCC-CGcUCGa -5'
24220 5' -62 NC_005263.2 + 45098 0.67 0.294001
Target:  5'- gCGCGcuaCGUCGCggcggauGCGCC-GGCGAGCg -3'
miRNA:   3'- -GUGCag-GUAGCG-------CGCGGcCCGCUCGa -5'
24220 5' -62 NC_005263.2 + 15350 0.67 0.287667
Target:  5'- uGCGUCgGUCGCauuGCGCCGcGCaAGCg -3'
miRNA:   3'- gUGCAGgUAGCG---CGCGGCcCGcUCGa -5'
24220 5' -62 NC_005263.2 + 33411 0.67 0.280756
Target:  5'- gGCGUCgAUCGCcuugaGCGCCGcGCGcGCg -3'
miRNA:   3'- gUGCAGgUAGCG-----CGCGGCcCGCuCGa -5'
24220 5' -62 NC_005263.2 + 10930 0.68 0.260815
Target:  5'- gCACG-UgAUCGCGUcguGCgGGGUGAGCg -3'
miRNA:   3'- -GUGCaGgUAGCGCG---CGgCCCGCUCGa -5'
24220 5' -62 NC_005263.2 + 46823 0.68 0.248172
Target:  5'- uCGCGUaacgCAaCGCGCGCCaGGCGGcGCg -3'
miRNA:   3'- -GUGCAg---GUaGCGCGCGGcCCGCU-CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.