miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24221 3' -54.6 NC_005263.2 + 8031 0.66 0.717428
Target:  5'- -gUCUUGcgaGGCguccgCGCCGUGGcgccgCGCGAg -3'
miRNA:   3'- aaAGAGC---UCGa----GCGGCACCua---GUGCU- -5'
24221 3' -54.6 NC_005263.2 + 47936 0.66 0.70648
Target:  5'- ----gCGGGCUCGCCccgggcgcGGAUCGCGu -3'
miRNA:   3'- aaagaGCUCGAGCGGca------CCUAGUGCu -5'
24221 3' -54.6 NC_005263.2 + 45462 0.66 0.695456
Target:  5'- --cCUCGAGCccggCGCgaaCGUGccGAUCGCGAu -3'
miRNA:   3'- aaaGAGCUCGa---GCG---GCAC--CUAGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 29178 0.66 0.673229
Target:  5'- --gCUCGAGCgcucgUGCCGcGcGGUCACGc -3'
miRNA:   3'- aaaGAGCUCGa----GCGGCaC-CUAGUGCu -5'
24221 3' -54.6 NC_005263.2 + 1701 0.67 0.662049
Target:  5'- -aUCgUCGAGUUgGCCGUGGuaaGCGu -3'
miRNA:   3'- aaAG-AGCUCGAgCGGCACCuagUGCu -5'
24221 3' -54.6 NC_005263.2 + 41348 0.68 0.583577
Target:  5'- ----cCGAGCUCGCCc-GGcgCGCGAu -3'
miRNA:   3'- aaagaGCUCGAGCGGcaCCuaGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 44995 0.68 0.550383
Target:  5'- ---aUCGAgGCgcgcauggCGCCGUGGcUCGCGAa -3'
miRNA:   3'- aaagAGCU-CGa-------GCGGCACCuAGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 29574 0.69 0.517792
Target:  5'- cUUCUUGAacgcGCUCGCgGUGucgacgccgccGAUCGCGAg -3'
miRNA:   3'- aAAGAGCU----CGAGCGgCAC-----------CUAGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 39373 0.69 0.485996
Target:  5'- -gUCUCGAccccGCUCGCCGaguacgcgaUGGA-CGCGGc -3'
miRNA:   3'- aaAGAGCU----CGAGCGGC---------ACCUaGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 2620 0.73 0.288175
Target:  5'- --cCUCGGGUUUGUCGUaGAUCGCGAu -3'
miRNA:   3'- aaaGAGCUCGAGCGGCAcCUAGUGCU- -5'
24221 3' -54.6 NC_005263.2 + 6601 1.06 0.001392
Target:  5'- aUUUCUCGAGCUCGCCGUGGAUCACGAc -3'
miRNA:   3'- -AAAGAGCUCGAGCGGCACCUAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.