miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24221 5' -61.2 NC_005263.2 + 39246 0.67 0.335395
Target:  5'- gGgCCGCGUaucccgucggcCGAGCuGCGCgcgaUGCUUGAu -3'
miRNA:   3'- -CgGGCGCA-----------GCUCGuCGCGg---ACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 950 0.67 0.335395
Target:  5'- aCCCGCGagCGgcgacguagcGGCGGuCGCCUGCgcgUCGGa -3'
miRNA:   3'- cGGGCGCa-GC----------UCGUC-GCGGACG---AGCU- -5'
24221 5' -61.2 NC_005263.2 + 3758 0.67 0.335395
Target:  5'- uGCUCGCGcgCGGGCAGCGgCacggUGUUCu- -3'
miRNA:   3'- -CGGGCGCa-GCUCGUCGCgG----ACGAGcu -5'
24221 5' -61.2 NC_005263.2 + 8799 0.67 0.327579
Target:  5'- aCCUGCGaUCGcgcgcGCAuGCGCCUGC-CGGc -3'
miRNA:   3'- cGGGCGC-AGCu----CGU-CGCGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 35786 0.67 0.319898
Target:  5'- cGCCgGCGauuaCGuGCuGGCGCC-GCUCGGc -3'
miRNA:   3'- -CGGgCGCa---GCuCG-UCGCGGaCGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 31484 0.67 0.319898
Target:  5'- cGCCUGgccCGUC-AGCGGCGCgagcugCUGCUCGc -3'
miRNA:   3'- -CGGGC---GCAGcUCGUCGCG------GACGAGCu -5'
24221 5' -61.2 NC_005263.2 + 26981 0.67 0.312353
Target:  5'- uCCUGCGcgcCGAGCAgcacccgcuGCGCCggGCUCGu -3'
miRNA:   3'- cGGGCGCa--GCUCGU---------CGCGGa-CGAGCu -5'
24221 5' -61.2 NC_005263.2 + 19119 0.67 0.304945
Target:  5'- cGgCCGCGcCGAGCgcaucgccgGGCGCUUGCgCGu -3'
miRNA:   3'- -CgGGCGCaGCUCG---------UCGCGGACGaGCu -5'
24221 5' -61.2 NC_005263.2 + 38414 0.67 0.304945
Target:  5'- uGUCgCGCGUCGGGU-GCGCCgGCgUGAc -3'
miRNA:   3'- -CGG-GCGCAGCUCGuCGCGGaCGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 24763 0.68 0.297671
Target:  5'- gGCCUGCuacuGUCGcucacgGGCGGCGUCggcgGCUCGc -3'
miRNA:   3'- -CGGGCG----CAGC------UCGUCGCGGa---CGAGCu -5'
24221 5' -61.2 NC_005263.2 + 38902 0.68 0.297671
Target:  5'- gGCaCCGUcaCGAGCAagccggcgccGCGCCgaGCUCGAc -3'
miRNA:   3'- -CG-GGCGcaGCUCGU----------CGCGGa-CGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 33338 0.68 0.297671
Target:  5'- cGUgCGCGUCGGGCAGC-UUUGCgacuUCGGc -3'
miRNA:   3'- -CGgGCGCAGCUCGUCGcGGACG----AGCU- -5'
24221 5' -61.2 NC_005263.2 + 27261 0.68 0.295516
Target:  5'- cGCUCGCGUCGAauuggcccgacugcGCGaggccgagccGCGCCUGCa-GAa -3'
miRNA:   3'- -CGGGCGCAGCU--------------CGU----------CGCGGACGagCU- -5'
24221 5' -61.2 NC_005263.2 + 38609 0.68 0.290533
Target:  5'- aGCCCGCGcacgCGAuggaUAGCGCCgGCgCGAa -3'
miRNA:   3'- -CGGGCGCa---GCUc---GUCGCGGaCGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 44884 0.68 0.28353
Target:  5'- uGCCCgGCGUcaucggggCGGGCGGCGgCCgggccgGCUCa- -3'
miRNA:   3'- -CGGG-CGCA--------GCUCGUCGC-GGa-----CGAGcu -5'
24221 5' -61.2 NC_005263.2 + 26063 0.68 0.28353
Target:  5'- -gCUGCGUCGAGCugcuggcgcacguGCGCauagagcgcgucgagCUGCUCGGa -3'
miRNA:   3'- cgGGCGCAGCUCGu------------CGCG---------------GACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 24090 0.68 0.28353
Target:  5'- uGCCgagCGCGUCGGcacuuugcagcGCGGCGCCU-UUCGGg -3'
miRNA:   3'- -CGG---GCGCAGCU-----------CGUCGCGGAcGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 5073 0.68 0.276661
Target:  5'- cGCgCCGCGUCaGGugccaacccgcGCAGUGCUUGCaCGAg -3'
miRNA:   3'- -CG-GGCGCAG-CU-----------CGUCGCGGACGaGCU- -5'
24221 5' -61.2 NC_005263.2 + 9371 0.68 0.276661
Target:  5'- cGCCgGCGgcugCGGGaauuuCAGCGCggcggccagCUGCUCGAc -3'
miRNA:   3'- -CGGgCGCa---GCUC-----GUCGCG---------GACGAGCU- -5'
24221 5' -61.2 NC_005263.2 + 16367 0.68 0.276661
Target:  5'- cGgCCGCGUCGcucGGCGGCGgCCUGa-UGAa -3'
miRNA:   3'- -CgGGCGCAGC---UCGUCGC-GGACgaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.