miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24222 3' -58.1 NC_005263.2 + 40853 0.66 0.570407
Target:  5'- cCGACAUcguugacggucgagaGCCUCG-CGUGCAccGCAUGGc -3'
miRNA:   3'- cGCUGUG---------------CGGAGCaGCGCGU--CGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 18943 0.66 0.56614
Target:  5'- aGCGcucgaGCGCGCCgguUCGagCGCaGcCGGCACGAc -3'
miRNA:   3'- -CGC-----UGUGCGG---AGCa-GCG-C-GUCGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 9468 0.66 0.56614
Target:  5'- aGCGGCGCGCC-CGgc-UGCAGCugacgcuucACGAu -3'
miRNA:   3'- -CGCUGUGCGGaGCagcGCGUCG---------UGCU- -5'
24222 3' -58.1 NC_005263.2 + 9059 0.66 0.56614
Target:  5'- gGCGAacagcuguaGCGCCUCGaCGUGcCAGUuCGGg -3'
miRNA:   3'- -CGCUg--------UGCGGAGCaGCGC-GUCGuGCU- -5'
24222 3' -58.1 NC_005263.2 + 3746 0.66 0.56614
Target:  5'- uCGAagUACGCCUgcUCGCGCgcgggcagcGGCACGGu -3'
miRNA:   3'- cGCU--GUGCGGAgcAGCGCG---------UCGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 10272 0.66 0.56614
Target:  5'- cGCGAaACGCCgCGUCG-GCGaCAUGAg -3'
miRNA:   3'- -CGCUgUGCGGaGCAGCgCGUcGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 9887 0.66 0.55551
Target:  5'- gGCGcuuuCAUGCUcgUCGUcggCGCGCGGCGuCGGg -3'
miRNA:   3'- -CGCu---GUGCGG--AGCA---GCGCGUCGU-GCU- -5'
24222 3' -58.1 NC_005263.2 + 7483 0.66 0.55551
Target:  5'- cGCGcUugGCCUCGaaGUGCcGCGCa- -3'
miRNA:   3'- -CGCuGugCGGAGCagCGCGuCGUGcu -5'
24222 3' -58.1 NC_005263.2 + 17729 0.66 0.55551
Target:  5'- aGCGAuCGCGCacaucccCGaaGCGCuGCACGAc -3'
miRNA:   3'- -CGCU-GUGCGga-----GCagCGCGuCGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 33876 0.66 0.55551
Target:  5'- --cGCACGCCacgggucggauUCGUUGCGCgcgaacGGCACGc -3'
miRNA:   3'- cgcUGUGCGG-----------AGCAGCGCG------UCGUGCu -5'
24222 3' -58.1 NC_005263.2 + 25242 0.66 0.55551
Target:  5'- aGCGACAacaGgCUUGUa-CGCAGCAcCGAu -3'
miRNA:   3'- -CGCUGUg--CgGAGCAgcGCGUCGU-GCU- -5'
24222 3' -58.1 NC_005263.2 + 20129 0.66 0.55551
Target:  5'- gGCG-UACG-CUCG-CGCGCAGCAg-- -3'
miRNA:   3'- -CGCuGUGCgGAGCaGCGCGUCGUgcu -5'
24222 3' -58.1 NC_005263.2 + 42900 0.66 0.55551
Target:  5'- cGCGcGCuCGCCUgGaCGCGaguGCGCGAg -3'
miRNA:   3'- -CGC-UGuGCGGAgCaGCGCgu-CGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 21580 0.66 0.55551
Target:  5'- cGCGuGCuCGCCgccggCGUCGaCGCcGCGCGc -3'
miRNA:   3'- -CGC-UGuGCGGa----GCAGC-GCGuCGUGCu -5'
24222 3' -58.1 NC_005263.2 + 24347 0.66 0.55551
Target:  5'- aCGGCGCGCCgacgcccguaGUCGgGgauGGCGCGAa -3'
miRNA:   3'- cGCUGUGCGGag--------CAGCgCg--UCGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 32887 0.66 0.55551
Target:  5'- gGCGGCGaGUUUCGUgGCGuCGGCGuCGGc -3'
miRNA:   3'- -CGCUGUgCGGAGCAgCGC-GUCGU-GCU- -5'
24222 3' -58.1 NC_005263.2 + 14033 0.66 0.554449
Target:  5'- gGCGACgguucggccacggGCGCCgCGUCgaGCGCauugAGCGCGc -3'
miRNA:   3'- -CGCUG-------------UGCGGaGCAG--CGCG----UCGUGCu -5'
24222 3' -58.1 NC_005263.2 + 38613 0.66 0.544938
Target:  5'- cGCG-CACGCgaUGgauaGCGCcGGCGCGAa -3'
miRNA:   3'- -CGCuGUGCGgaGCag--CGCG-UCGUGCU- -5'
24222 3' -58.1 NC_005263.2 + 40885 0.66 0.544938
Target:  5'- gGCG-CGCGCCUUcugGUCGC-CGGCgAUGGu -3'
miRNA:   3'- -CGCuGUGCGGAG---CAGCGcGUCG-UGCU- -5'
24222 3' -58.1 NC_005263.2 + 2781 0.66 0.544938
Target:  5'- uCGuCACGaCCgugaagCGaUUGCGCAGCGCGu -3'
miRNA:   3'- cGCuGUGC-GGa-----GC-AGCGCGUCGUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.