miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24223 5' -55.6 NC_005263.2 + 30200 0.66 0.709005
Target:  5'- cCGgGGCGCGCCGaucuGCGCGccguUCAcGGu -3'
miRNA:   3'- -GCgCCGUGCGGUaac-UGCGCu---AGU-CC- -5'
24223 5' -55.6 NC_005263.2 + 23939 0.66 0.709005
Target:  5'- gGCGGCuugcGCGUCGUgaGCGUGAcggugccacccgUCAGGc -3'
miRNA:   3'- gCGCCG----UGCGGUAacUGCGCU------------AGUCC- -5'
24223 5' -55.6 NC_005263.2 + 1643 0.66 0.698239
Target:  5'- gGCGGCguagcccuggauGCGCU----GCGCGGUCGGa -3'
miRNA:   3'- gCGCCG------------UGCGGuaacUGCGCUAGUCc -5'
24223 5' -55.6 NC_005263.2 + 4540 0.66 0.698239
Target:  5'- uGCGGCgcugugccgacgGCGgCAUUGACGCGuauauagCGGc -3'
miRNA:   3'- gCGCCG------------UGCgGUAACUGCGCua-----GUCc -5'
24223 5' -55.6 NC_005263.2 + 21820 0.66 0.698239
Target:  5'- gGCGaGCAaGCCAUUcuCGCGGgcguUCAGGc -3'
miRNA:   3'- gCGC-CGUgCGGUAAcuGCGCU----AGUCC- -5'
24223 5' -55.6 NC_005263.2 + 19068 0.66 0.698239
Target:  5'- gCGCGGCcuGCGCgCGcUGGUGCGucuugCAGGg -3'
miRNA:   3'- -GCGCCG--UGCG-GUaACUGCGCua---GUCC- -5'
24223 5' -55.6 NC_005263.2 + 33677 0.66 0.698239
Target:  5'- gCGCGcGCACGCCGUcGcAUG-GGUCuGGu -3'
miRNA:   3'- -GCGC-CGUGCGGUAaC-UGCgCUAGuCC- -5'
24223 5' -55.6 NC_005263.2 + 27806 0.66 0.698239
Target:  5'- gGCGGC-CGCCAUcGcguuCGCGAagcuggaCAGGu -3'
miRNA:   3'- gCGCCGuGCGGUAaCu---GCGCUa------GUCC- -5'
24223 5' -55.6 NC_005263.2 + 29076 0.66 0.687408
Target:  5'- gGCGGCGCgcaucgGCCGUcGcuACGCGAgUCAGu -3'
miRNA:   3'- gCGCCGUG------CGGUAaC--UGCGCU-AGUCc -5'
24223 5' -55.6 NC_005263.2 + 5206 0.66 0.687408
Target:  5'- gCGCGGCGuCGCUAccGuCGCGAauUCcGGa -3'
miRNA:   3'- -GCGCCGU-GCGGUaaCuGCGCU--AGuCC- -5'
24223 5' -55.6 NC_005263.2 + 17624 0.66 0.687408
Target:  5'- gCGCGGguCGCgCAUcGAUGCGuuccGUCGGc -3'
miRNA:   3'- -GCGCCguGCG-GUAaCUGCGC----UAGUCc -5'
24223 5' -55.6 NC_005263.2 + 1608 0.66 0.687408
Target:  5'- gCGCGGCggacacuucgACGCCGagUG-CGuCGGUCAGu -3'
miRNA:   3'- -GCGCCG----------UGCGGUa-ACuGC-GCUAGUCc -5'
24223 5' -55.6 NC_005263.2 + 27114 0.66 0.676525
Target:  5'- aCGcCGGCACGUC---GACGCG--CAGGc -3'
miRNA:   3'- -GC-GCCGUGCGGuaaCUGCGCuaGUCC- -5'
24223 5' -55.6 NC_005263.2 + 17188 0.66 0.676525
Target:  5'- uCGCGGCguACGCCGUcGcCGCGcUCGa- -3'
miRNA:   3'- -GCGCCG--UGCGGUAaCuGCGCuAGUcc -5'
24223 5' -55.6 NC_005263.2 + 30716 0.66 0.676525
Target:  5'- aGCGGCAgugguCGCCcgcaacGAUGaacaGAUCGGGg -3'
miRNA:   3'- gCGCCGU-----GCGGuaa---CUGCg---CUAGUCC- -5'
24223 5' -55.6 NC_005263.2 + 34047 0.66 0.676525
Target:  5'- gCGCGGCGCGCUcaAUgcgcucGACGCGGc---- -3'
miRNA:   3'- -GCGCCGUGCGG--UAa-----CUGCGCUagucc -5'
24223 5' -55.6 NC_005263.2 + 15353 0.66 0.676525
Target:  5'- aCGCGGCgcugaACGUCGUacUGcgcACGCuGUCGGGu -3'
miRNA:   3'- -GCGCCG-----UGCGGUA--AC---UGCGcUAGUCC- -5'
24223 5' -55.6 NC_005263.2 + 20761 0.66 0.675434
Target:  5'- gGCGGCcuguaacauggccGCGCCGcugaucgucGGCGCG-UCGGGu -3'
miRNA:   3'- gCGCCG-------------UGCGGUaa-------CUGCGCuAGUCC- -5'
24223 5' -55.6 NC_005263.2 + 10187 0.66 0.666694
Target:  5'- gGCGGCGCGCCu---GCGCccggcuguucguuuUCGGGa -3'
miRNA:   3'- gCGCCGUGCGGuaacUGCGcu------------AGUCC- -5'
24223 5' -55.6 NC_005263.2 + 9468 0.66 0.6656
Target:  5'- aGCGGCGCGCCcggcugcagcUGACGCu-UCAc- -3'
miRNA:   3'- gCGCCGUGCGGua--------ACUGCGcuAGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.