Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24224 | 3' | -57.5 | NC_005263.2 | + | 10849 | 0.66 | 0.559358 |
Target: 5'- gUUGGUGCGGGCUacggcGUCgCGGCggaaCUCGg -3' miRNA: 3'- aAGCCAUGCCCGA-----CAG-GCUGaa--GGGU- -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 35263 | 0.66 | 0.506149 |
Target: 5'- aUCGaaUACGGGCUGcCCGAUggCgCCAa -3' miRNA: 3'- aAGCc-AUGCCCGACaGGCUGaaG-GGU- -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 32905 | 0.67 | 0.495758 |
Target: 5'- gUCGGcgucgGCGGcccGCUGaCCGGCUUCCg- -3' miRNA: 3'- aAGCCa----UGCC---CGACaGGCUGAAGGgu -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 32371 | 0.67 | 0.465193 |
Target: 5'- cUCGGU-CGGGUaGUCCGACagCgCAu -3' miRNA: 3'- aAGCCAuGCCCGaCAGGCUGaaGgGU- -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 1706 | 0.68 | 0.445369 |
Target: 5'- gUCGGUugGGGCaUGUC-GAUaacUCCCu -3' miRNA: 3'- aAGCCAugCCCG-ACAGgCUGa--AGGGu -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 37684 | 0.71 | 0.262837 |
Target: 5'- aUCGG-ACGaGCUGUCCGACcuUUCCUg -3' miRNA: 3'- aAGCCaUGCcCGACAGGCUG--AAGGGu -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 5880 | 0.72 | 0.256173 |
Target: 5'- -gCGGUACGGGCcgaaGUCCG---UCCCAa -3' miRNA: 3'- aaGCCAUGCCCGa---CAGGCugaAGGGU- -5' |
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24224 | 3' | -57.5 | NC_005263.2 | + | 4140 | 1.05 | 0.000859 |
Target: 5'- cUUCGGUACGGGCUGUCCGACUUCCCAc -3' miRNA: 3'- -AAGCCAUGCCCGACAGGCUGAAGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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