miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24224 5' -55.4 NC_005263.2 + 6476 0.66 0.68109
Target:  5'- cGUgGGCcgcaGUGCaacCAGGCAGUCGacGAACGg -3'
miRNA:   3'- -CAgCUG----UACG---GUCCGUCAGC--CUUGCa -5'
24224 5' -55.4 NC_005263.2 + 18850 0.66 0.68109
Target:  5'- uGUCGAagugacuggUGUGCC--GCAGUgGGAGCGUg -3'
miRNA:   3'- -CAGCU---------GUACGGucCGUCAgCCUUGCA- -5'
24224 5' -55.4 NC_005263.2 + 23312 0.66 0.670017
Target:  5'- -aCGGCG-GCCAGGCGGgCGGcacCGUu -3'
miRNA:   3'- caGCUGUaCGGUCCGUCaGCCuu-GCA- -5'
24224 5' -55.4 NC_005263.2 + 42006 0.66 0.670017
Target:  5'- -aUGACGUGCC-GGCAGUgCGGc-CGg -3'
miRNA:   3'- caGCUGUACGGuCCGUCA-GCCuuGCa -5'
24224 5' -55.4 NC_005263.2 + 24040 0.66 0.643314
Target:  5'- gGUCGACGUGuCCGGGUucgcgcuguuguuGUCGGc-CGUg -3'
miRNA:   3'- -CAGCUGUAC-GGUCCGu------------CAGCCuuGCA- -5'
24224 5' -55.4 NC_005263.2 + 17250 0.66 0.636623
Target:  5'- cUCGACAagGCCGGGCaagcAGUCGucucGACGg -3'
miRNA:   3'- cAGCUGUa-CGGUCCG----UCAGCc---UUGCa -5'
24224 5' -55.4 NC_005263.2 + 22378 0.67 0.614321
Target:  5'- uGUCGAUcgGCggcauCGGGCAGgcCGcGAACGUa -3'
miRNA:   3'- -CAGCUGuaCG-----GUCCGUCa-GC-CUUGCA- -5'
24224 5' -55.4 NC_005263.2 + 27536 0.67 0.581011
Target:  5'- cGUCGGCAcgGCC-GGCAGgcCGGGcACGa -3'
miRNA:   3'- -CAGCUGUa-CGGuCCGUCa-GCCU-UGCa -5'
24224 5' -55.4 NC_005263.2 + 2575 0.67 0.569982
Target:  5'- aUCGGCAaucacgGCCguccAGGCAGUCGuGAAgGUc -3'
miRNA:   3'- cAGCUGUa-----CGG----UCCGUCAGC-CUUgCA- -5'
24224 5' -55.4 NC_005263.2 + 32686 0.68 0.559006
Target:  5'- uGUCGACGUGCgucagCAGGuCGGUCacGAGCGc -3'
miRNA:   3'- -CAGCUGUACG-----GUCC-GUCAGc-CUUGCa -5'
24224 5' -55.4 NC_005263.2 + 45342 0.68 0.54809
Target:  5'- gGUCGugAUGCCGGuCGGUCGcGACu- -3'
miRNA:   3'- -CAGCugUACGGUCcGUCAGCcUUGca -5'
24224 5' -55.4 NC_005263.2 + 26327 0.68 0.526469
Target:  5'- gGUCGGCGUGa-AGGuCGGUugCGGGACGUu -3'
miRNA:   3'- -CAGCUGUACggUCC-GUCA--GCCUUGCA- -5'
24224 5' -55.4 NC_005263.2 + 21000 0.69 0.494669
Target:  5'- cGUCGACGUGCCggcguuucAGGCgaucauccaGGUCGaGACGa -3'
miRNA:   3'- -CAGCUGUACGG--------UCCG---------UCAGCcUUGCa -5'
24224 5' -55.4 NC_005263.2 + 33446 0.7 0.443744
Target:  5'- cGUCGGCGUGUgGGGCAagacggCGGAcgagcGCGUa -3'
miRNA:   3'- -CAGCUGUACGgUCCGUca----GCCU-----UGCA- -5'
24224 5' -55.4 NC_005263.2 + 20712 0.7 0.414641
Target:  5'- -aCGACGcugcagGCCGGGCcGUCGGcAACGa -3'
miRNA:   3'- caGCUGUa-----CGGUCCGuCAGCC-UUGCa -5'
24224 5' -55.4 NC_005263.2 + 15596 0.7 0.414641
Target:  5'- uUCGACGUGCUGGcGCuuaucgcGUCGGAACu- -3'
miRNA:   3'- cAGCUGUACGGUC-CGu------CAGCCUUGca -5'
24224 5' -55.4 NC_005263.2 + 8650 0.7 0.405203
Target:  5'- gGUCGACGUaggucGUCAGGUAGuUCGGGAUa- -3'
miRNA:   3'- -CAGCUGUA-----CGGUCCGUC-AGCCUUGca -5'
24224 5' -55.4 NC_005263.2 + 29523 0.7 0.395902
Target:  5'- cGUCGGCGcGCCA-GCAGUggcCGGGACGc -3'
miRNA:   3'- -CAGCUGUaCGGUcCGUCA---GCCUUGCa -5'
24224 5' -55.4 NC_005263.2 + 24789 0.73 0.288108
Target:  5'- cGUCGGCGgcucGCCGGGC-GUCGGcggcGCGUa -3'
miRNA:   3'- -CAGCUGUa---CGGUCCGuCAGCCu---UGCA- -5'
24224 5' -55.4 NC_005263.2 + 4176 1.08 0.000919
Target:  5'- cGUCGACAUGCCAGGCAGUCGGAACGUg -3'
miRNA:   3'- -CAGCUGUACGGUCCGUCAGCCUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.