miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24225 3' -57.8 NC_005263.2 + 19113 0.66 0.587548
Target:  5'- gCCGgucggCCgCGCCGAGCGcaUCGCcgGGCGc -3'
miRNA:   3'- -GGUaca--GGaGCGGUUCGC--AGCG--CCGC- -5'
24225 3' -57.8 NC_005263.2 + 17019 0.66 0.587548
Target:  5'- uUCGUaUCgCUCGagCAGcGCGUCGCGGCc -3'
miRNA:   3'- -GGUAcAG-GAGCg-GUU-CGCAGCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 7957 0.66 0.576822
Target:  5'- gCCGUGUCCUUaCCuu-CGacaCGCGGCGc -3'
miRNA:   3'- -GGUACAGGAGcGGuucGCa--GCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 3296 0.66 0.576822
Target:  5'- gCCGUuUUCUUGCCuGGGCGcggccgCGCGGUGu -3'
miRNA:   3'- -GGUAcAGGAGCGG-UUCGCa-----GCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 45093 0.66 0.55551
Target:  5'- ---aGUUCgcgCGCUA--CGUCGCGGCGg -3'
miRNA:   3'- gguaCAGGa--GCGGUucGCAGCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 45542 0.66 0.544938
Target:  5'- gCCGUGauugCCgaUCGUCucGCGuUCGCGGCc -3'
miRNA:   3'- -GGUACa---GG--AGCGGuuCGC-AGCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 3334 0.66 0.534433
Target:  5'- ---cGUCUgcgCGCCGccGGCGcCGCGcGCGg -3'
miRNA:   3'- gguaCAGGa--GCGGU--UCGCaGCGC-CGC- -5'
24225 3' -57.8 NC_005263.2 + 27787 0.67 0.523999
Target:  5'- gCCAUG-CUucgcgcgguacaUCGCCGucGUGaUCGCGGCGu -3'
miRNA:   3'- -GGUACaGG------------AGCGGUu-CGC-AGCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 14673 0.67 0.513645
Target:  5'- cUCGUGgCCgacCGCUAcGCGcgCGCGGCGc -3'
miRNA:   3'- -GGUACaGGa--GCGGUuCGCa-GCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 24074 0.67 0.513645
Target:  5'- gCCGUGcugaUCCagcUGCCGAGCG-CGuCGGCa -3'
miRNA:   3'- -GGUAC----AGGa--GCGGUUCGCaGC-GCCGc -5'
24225 3' -57.8 NC_005263.2 + 37428 0.67 0.493196
Target:  5'- ---cGUCCUCGUCGucauacgucGGCGcgCGCGGUc -3'
miRNA:   3'- gguaCAGGAGCGGU---------UCGCa-GCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 47228 0.67 0.493196
Target:  5'- aCCAU-UCCgaUCGCCAacGGCGUCGuCaGCGu -3'
miRNA:   3'- -GGUAcAGG--AGCGGU--UCGCAGC-GcCGC- -5'
24225 3' -57.8 NC_005263.2 + 7643 0.67 0.483112
Target:  5'- --cUGUCC-CGCUuaguaggaguGGCGUUGCGGCc -3'
miRNA:   3'- gguACAGGaGCGGu---------UCGCAGCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 11220 0.68 0.45348
Target:  5'- cCCGUGaUUUCGCCAAGCG-CGCccgGGuCGa -3'
miRNA:   3'- -GGUACaGGAGCGGUUCGCaGCG---CC-GC- -5'
24225 3' -57.8 NC_005263.2 + 21578 0.68 0.45348
Target:  5'- gCCGcGUgCUCGCCGccGGCGUCGaCGccGCGc -3'
miRNA:   3'- -GGUaCAgGAGCGGU--UCGCAGC-GC--CGC- -5'
24225 3' -57.8 NC_005263.2 + 34002 0.68 0.434284
Target:  5'- gCCGUGUUg--GCU--GCGUCGCGGCGc -3'
miRNA:   3'- -GGUACAGgagCGGuuCGCAGCGCCGC- -5'
24225 3' -57.8 NC_005263.2 + 8373 0.68 0.434284
Target:  5'- uUCAguUCgCUCGCCAGGuCGaCGCGGCc -3'
miRNA:   3'- -GGUacAG-GAGCGGUUC-GCaGCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 3492 0.68 0.424865
Target:  5'- --cUGUCCUuCGCCGuugacgauguucAGCuGUUGCGGCu -3'
miRNA:   3'- gguACAGGA-GCGGU------------UCG-CAGCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 38665 0.69 0.415568
Target:  5'- gCCAa--CCUCGCCAAGaucaaGgugCGCGGCu -3'
miRNA:   3'- -GGUacaGGAGCGGUUCg----Ca--GCGCCGc -5'
24225 3' -57.8 NC_005263.2 + 36350 0.69 0.415568
Target:  5'- cCCGaGUggUCGCCAGGUGUCGCGuCGc -3'
miRNA:   3'- -GGUaCAggAGCGGUUCGCAGCGCcGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.