Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 3296 | 0.66 | 0.576822 |
Target: 5'- gCCGUuUUCUUGCCuGGGCGcggccgCGCGGUGu -3' miRNA: 3'- -GGUAcAGGAGCGG-UUCGCa-----GCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 17019 | 0.66 | 0.587548 |
Target: 5'- uUCGUaUCgCUCGagCAGcGCGUCGCGGCc -3' miRNA: 3'- -GGUAcAG-GAGCg-GUU-CGCAGCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 19113 | 0.66 | 0.587548 |
Target: 5'- gCCGgucggCCgCGCCGAGCGcaUCGCcgGGCGc -3' miRNA: 3'- -GGUaca--GGaGCGGUUCGC--AGCG--CCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 3334 | 0.66 | 0.534433 |
Target: 5'- ---cGUCUgcgCGCCGccGGCGcCGCGcGCGg -3' miRNA: 3'- gguaCAGGa--GCGGU--UCGCaGCGC-CGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 7957 | 0.66 | 0.576822 |
Target: 5'- gCCGUGUCCUUaCCuu-CGacaCGCGGCGc -3' miRNA: 3'- -GGUACAGGAGcGGuucGCa--GCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 45093 | 0.66 | 0.55551 |
Target: 5'- ---aGUUCgcgCGCUA--CGUCGCGGCGg -3' miRNA: 3'- gguaCAGGa--GCGGUucGCAGCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 45542 | 0.66 | 0.544938 |
Target: 5'- gCCGUGauugCCgaUCGUCucGCGuUCGCGGCc -3' miRNA: 3'- -GGUACa---GG--AGCGGuuCGC-AGCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 27787 | 0.67 | 0.523999 |
Target: 5'- gCCAUG-CUucgcgcgguacaUCGCCGucGUGaUCGCGGCGu -3' miRNA: 3'- -GGUACaGG------------AGCGGUu-CGC-AGCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 37428 | 0.67 | 0.493196 |
Target: 5'- ---cGUCCUCGUCGucauacgucGGCGcgCGCGGUc -3' miRNA: 3'- gguaCAGGAGCGGU---------UCGCa-GCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 24074 | 0.67 | 0.513645 |
Target: 5'- gCCGUGcugaUCCagcUGCCGAGCG-CGuCGGCa -3' miRNA: 3'- -GGUAC----AGGa--GCGGUUCGCaGC-GCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 14673 | 0.67 | 0.513645 |
Target: 5'- cUCGUGgCCgacCGCUAcGCGcgCGCGGCGc -3' miRNA: 3'- -GGUACaGGa--GCGGUuCGCa-GCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 47228 | 0.67 | 0.493196 |
Target: 5'- aCCAU-UCCgaUCGCCAacGGCGUCGuCaGCGu -3' miRNA: 3'- -GGUAcAGG--AGCGGU--UCGCAGC-GcCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 7643 | 0.67 | 0.483112 |
Target: 5'- --cUGUCC-CGCUuaguaggaguGGCGUUGCGGCc -3' miRNA: 3'- gguACAGGaGCGGu---------UCGCAGCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 21578 | 0.68 | 0.45348 |
Target: 5'- gCCGcGUgCUCGCCGccGGCGUCGaCGccGCGc -3' miRNA: 3'- -GGUaCAgGAGCGGU--UCGCAGC-GC--CGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 11220 | 0.68 | 0.45348 |
Target: 5'- cCCGUGaUUUCGCCAAGCG-CGCccgGGuCGa -3' miRNA: 3'- -GGUACaGGAGCGGUUCGCaGCG---CC-GC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 34002 | 0.68 | 0.434284 |
Target: 5'- gCCGUGUUg--GCU--GCGUCGCGGCGc -3' miRNA: 3'- -GGUACAGgagCGGuuCGCAGCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 8373 | 0.68 | 0.434284 |
Target: 5'- uUCAguUCgCUCGCCAGGuCGaCGCGGCc -3' miRNA: 3'- -GGUacAG-GAGCGGUUC-GCaGCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 3492 | 0.68 | 0.424865 |
Target: 5'- --cUGUCCUuCGCCGuugacgauguucAGCuGUUGCGGCu -3' miRNA: 3'- gguACAGGA-GCGGU------------UCG-CAGCGCCGc -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 704 | 0.69 | 0.406397 |
Target: 5'- aUCGUG-CCgcCGCCcgcGAGCGcCGUGGCGa -3' miRNA: 3'- -GGUACaGGa-GCGG---UUCGCaGCGCCGC- -5' |
|||||||
24225 | 3' | -57.8 | NC_005263.2 | + | 31737 | 0.69 | 0.379661 |
Target: 5'- aUCAgg-CCgcCGCCGAGCGaCGCGGCc -3' miRNA: 3'- -GGUacaGGa-GCGGUUCGCaGCGCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home