miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24226 3' -59.4 NC_005263.2 + 9986 0.66 0.471301
Target:  5'- aCGCCGuCCGGuucGCCGucuugcGcGCCAGGUg -3'
miRNA:   3'- gGCGGC-GGCUu--CGGUu-----CuCGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 13788 0.66 0.471301
Target:  5'- gUGCCGCCGAucGCUucGccCCAGGUg -3'
miRNA:   3'- gGCGGCGGCUu-CGGuuCucGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 32646 0.66 0.461435
Target:  5'- -aGCgGCCGaAAGCCuuccGGAugGCgCGGGUCg -3'
miRNA:   3'- ggCGgCGGC-UUCGGu---UCU--CG-GUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 2265 0.66 0.461435
Target:  5'- gCGCCGCgCGcucGGCCAAGguugcGGUCAaaucGGUCa -3'
miRNA:   3'- gGCGGCG-GCu--UCGGUUC-----UCGGU----CCAG- -5'
24226 3' -59.4 NC_005263.2 + 26943 0.66 0.461435
Target:  5'- uCCGCC-CCGuGGCguAGccGCCGGGUg -3'
miRNA:   3'- -GGCGGcGGCuUCGguUCu-CGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 3617 0.66 0.451679
Target:  5'- aUGCCGCCGucGGUCAGGuaGGCCAuuUCg -3'
miRNA:   3'- gGCGGCGGCu-UCGGUUC--UCGGUccAG- -5'
24226 3' -59.4 NC_005263.2 + 22224 0.66 0.451679
Target:  5'- gCCGUCGCCGgcGUC---GGCCcGGUUg -3'
miRNA:   3'- -GGCGGCGGCuuCGGuucUCGGuCCAG- -5'
24226 3' -59.4 NC_005263.2 + 13938 0.66 0.451679
Target:  5'- gUGCCGuuGAAGUCGAGcGCaUAGGa- -3'
miRNA:   3'- gGCGGCggCUUCGGUUCuCG-GUCCag -5'
24226 3' -59.4 NC_005263.2 + 33681 0.66 0.442038
Target:  5'- gCGCaCGCCGucGCau-GGGUCuGGUCg -3'
miRNA:   3'- gGCG-GCGGCuuCGguuCUCGGuCCAG- -5'
24226 3' -59.4 NC_005263.2 + 19020 0.66 0.44108
Target:  5'- gCCGUCGCUGAAccgcgccuaucgcGCCGuagcGGGCCGcGUCg -3'
miRNA:   3'- -GGCGGCGGCUU-------------CGGUu---CUCGGUcCAG- -5'
24226 3' -59.4 NC_005263.2 + 28728 0.66 0.430623
Target:  5'- gCGCCGCCGAGGCUGAcGGCaaugcgcauccGGUg -3'
miRNA:   3'- gGCGGCGGCUUCGGUUcUCGgu---------CCAg -5'
24226 3' -59.4 NC_005263.2 + 27695 0.67 0.422176
Target:  5'- gUGCgCGCCGgcGCCGGcGGCCGcauaggcuugcucGGUCg -3'
miRNA:   3'- gGCG-GCGGCuuCGGUUcUCGGU-------------CCAG- -5'
24226 3' -59.4 NC_005263.2 + 26118 0.67 0.41383
Target:  5'- gCGCCGCuCGAAGUCAG----CGGGUCg -3'
miRNA:   3'- gGCGGCG-GCUUCGGUUcucgGUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 8332 0.67 0.404677
Target:  5'- -aGCCGUucaggaacuucgCGAGGCCGAGGGCCGa--- -3'
miRNA:   3'- ggCGGCG------------GCUUCGGUUCUCGGUccag -5'
24226 3' -59.4 NC_005263.2 + 10010 0.67 0.399247
Target:  5'- uCgGCCuuGCCGAagugcuucgcauccaGGUCAGGGcGCCAGGUa -3'
miRNA:   3'- -GgCGG--CGGCU---------------UCGGUUCU-CGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 24859 0.67 0.394757
Target:  5'- gCGCCaGCCGGcggcuacGGCCAGGAuaCGGGa- -3'
miRNA:   3'- gGCGG-CGGCU-------UCGGUUCUcgGUCCag -5'
24226 3' -59.4 NC_005263.2 + 23795 0.67 0.394757
Target:  5'- aCGaCCGCCGAugcgacgcgcgcgAGCCAAucGCuCGGGUUu -3'
miRNA:   3'- gGC-GGCGGCU-------------UCGGUUcuCG-GUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 20618 0.67 0.386759
Target:  5'- aCGCCGUCGAgaacgaAGUCAAG-GCCGuGGcCg -3'
miRNA:   3'- gGCGGCGGCU------UCGGUUCuCGGU-CCaG- -5'
24226 3' -59.4 NC_005263.2 + 26877 0.67 0.386759
Target:  5'- gCGCCGUCGAuGCgAA-AGCC-GGUCg -3'
miRNA:   3'- gGCGGCGGCUuCGgUUcUCGGuCCAG- -5'
24226 3' -59.4 NC_005263.2 + 10030 0.67 0.377998
Target:  5'- aCCGCCGCCGA-GCUgcucGAGUuucugCAGGaUCg -3'
miRNA:   3'- -GGCGGCGGCUuCGGuu--CUCG-----GUCC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.