miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24226 3' -59.4 NC_005263.2 + 709 0.68 0.336233
Target:  5'- gCCGCCGCCcgcGAGcGCCGu-GGCgAGGUUg -3'
miRNA:   3'- -GGCGGCGG---CUU-CGGUucUCGgUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 2265 0.66 0.461435
Target:  5'- gCGCCGCgCGcucGGCCAAGguugcGGUCAaaucGGUCa -3'
miRNA:   3'- gGCGGCG-GCu--UCGGUUC-----UCGGU----CCAG- -5'
24226 3' -59.4 NC_005263.2 + 2954 1.1 0.000261
Target:  5'- gCCGCCGCCGAAGCCAAGAGCCAGGUCu -3'
miRNA:   3'- -GGCGGCGGCUUCGGUUCUCGGUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 3192 0.68 0.328295
Target:  5'- gCCGCUGCgCGucGgCGAGcgcGGCCAGGaUCg -3'
miRNA:   3'- -GGCGGCG-GCuuCgGUUC---UCGGUCC-AG- -5'
24226 3' -59.4 NC_005263.2 + 3341 0.68 0.369371
Target:  5'- gCGCCGCCGgcGCCGcGcGC--GGUCg -3'
miRNA:   3'- gGCGGCGGCuuCGGUuCuCGguCCAG- -5'
24226 3' -59.4 NC_005263.2 + 3617 0.66 0.451679
Target:  5'- aUGCCGCCGucGGUCAGGuaGGCCAuuUCg -3'
miRNA:   3'- gGCGGCGGCu-UCGGUUC--UCGGUccAG- -5'
24226 3' -59.4 NC_005263.2 + 4171 0.71 0.22
Target:  5'- uCCGCCGUCGAcauGCCAGGcAGUCGGa-- -3'
miRNA:   3'- -GGCGGCGGCUu--CGGUUC-UCGGUCcag -5'
24226 3' -59.4 NC_005263.2 + 5348 0.69 0.297937
Target:  5'- aCGCCGCCGuggauGCCcGGAuucuUCGGGUCg -3'
miRNA:   3'- gGCGGCGGCuu---CGGuUCUc---GGUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 8332 0.67 0.404677
Target:  5'- -aGCCGUucaggaacuucgCGAGGCCGAGGGCCGa--- -3'
miRNA:   3'- ggCGGCG------------GCUUCGGUUCUCGGUccag -5'
24226 3' -59.4 NC_005263.2 + 8755 0.71 0.23769
Target:  5'- gCCGCCGCCGAGcgaaucggcuGCCAGcc-CCGGGUg -3'
miRNA:   3'- -GGCGGCGGCUU----------CGGUUcucGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 9986 0.66 0.471301
Target:  5'- aCGCCGuCCGGuucGCCGucuugcGcGCCAGGUg -3'
miRNA:   3'- gGCGGC-GGCUu--CGGUu-----CuCGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 10010 0.67 0.399247
Target:  5'- uCgGCCuuGCCGAagugcuucgcauccaGGUCAGGGcGCCAGGUa -3'
miRNA:   3'- -GgCGG--CGGCU---------------UCGGUUCU-CGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 10030 0.67 0.377998
Target:  5'- aCCGCCGCCGA-GCUgcucGAGUuucugCAGGaUCg -3'
miRNA:   3'- -GGCGGCGGCUuCGGuu--CUCG-----GUCC-AG- -5'
24226 3' -59.4 NC_005263.2 + 10383 0.7 0.269802
Target:  5'- gCCGCCacgcGCCGGgccGGCCGGcGAG-CGGGUCc -3'
miRNA:   3'- -GGCGG----CGGCU---UCGGUU-CUCgGUCCAG- -5'
24226 3' -59.4 NC_005263.2 + 12583 0.71 0.214358
Target:  5'- gCGCCGCCGGgcgcAGUCGGcGcGCCAGuGUCa -3'
miRNA:   3'- gGCGGCGGCU----UCGGUU-CuCGGUC-CAG- -5'
24226 3' -59.4 NC_005263.2 + 12649 0.7 0.263111
Target:  5'- aCGCCGUCGAuaucgucgucGGCCGGcGcGCCgGGGUCg -3'
miRNA:   3'- gGCGGCGGCU----------UCGGUU-CuCGG-UCCAG- -5'
24226 3' -59.4 NC_005263.2 + 13788 0.66 0.471301
Target:  5'- gUGCCGCCGAucGCUucGccCCAGGUg -3'
miRNA:   3'- gGCGGCGGCUu-CGGuuCucGGUCCAg -5'
24226 3' -59.4 NC_005263.2 + 13938 0.66 0.451679
Target:  5'- gUGCCGuuGAAGUCGAGcGCaUAGGa- -3'
miRNA:   3'- gGCGGCggCUUCGGUUCuCG-GUCCag -5'
24226 3' -59.4 NC_005263.2 + 16627 0.7 0.269802
Target:  5'- gCGCCGCUGAcgGGCCAGGcGCCGa--- -3'
miRNA:   3'- gGCGGCGGCU--UCGGUUCuCGGUccag -5'
24226 3' -59.4 NC_005263.2 + 19020 0.66 0.44108
Target:  5'- gCCGUCGCUGAAccgcgccuaucgcGCCGuagcGGGCCGcGUCg -3'
miRNA:   3'- -GGCGGCGGCUU-------------CGGUu---CUCGGUcCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.