miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24226 5' -55 NC_005263.2 + 37604 0.66 0.710563
Target:  5'- gCCGAC---GCGCUGGUUUaucagcCGUCGCg -3'
miRNA:   3'- -GGCUGgacCGCGACCAGAaa----GCAGUG- -5'
24226 5' -55 NC_005263.2 + 12513 0.66 0.699723
Target:  5'- gCCGGCUUcGCGCgGGUUggcgUUCGcauUCACg -3'
miRNA:   3'- -GGCUGGAcCGCGaCCAGa---AAGC---AGUG- -5'
24226 5' -55 NC_005263.2 + 27033 0.66 0.688816
Target:  5'- gCCGACCUGGCcGCcuugUGGa---UCGUCGu -3'
miRNA:   3'- -GGCUGGACCG-CG----ACCagaaAGCAGUg -5'
24226 5' -55 NC_005263.2 + 14102 0.67 0.655809
Target:  5'- aCCGGCU--GCGCggcGGUCgc-CGUCGCg -3'
miRNA:   3'- -GGCUGGacCGCGa--CCAGaaaGCAGUG- -5'
24226 5' -55 NC_005263.2 + 24246 0.67 0.655809
Target:  5'- aCCGACCUGGCugaagcaCUGGaCa---GUCACg -3'
miRNA:   3'- -GGCUGGACCGc------GACCaGaaagCAGUG- -5'
24226 5' -55 NC_005263.2 + 15600 0.67 0.655809
Target:  5'- aCGugCUGGCGCUuaucGcGUCggaacugcCGUCGCu -3'
miRNA:   3'- gGCugGACCGCGA----C-CAGaaa-----GCAGUG- -5'
24226 5' -55 NC_005263.2 + 27402 0.67 0.652492
Target:  5'- cCCGGCCUGcagcgucguagcgaGUGCU-GUCg--CGUCGCg -3'
miRNA:   3'- -GGCUGGAC--------------CGCGAcCAGaaaGCAGUG- -5'
24226 5' -55 NC_005263.2 + 1281 0.67 0.644748
Target:  5'- gCCG-CCUGGCGC-GcGUUg--CGUUACg -3'
miRNA:   3'- -GGCuGGACCGCGaC-CAGaaaGCAGUG- -5'
24226 5' -55 NC_005263.2 + 27414 0.67 0.644748
Target:  5'- aCGACC-GGCGCaGGUUUcgCGcCGCc -3'
miRNA:   3'- gGCUGGaCCGCGaCCAGAaaGCaGUG- -5'
24226 5' -55 NC_005263.2 + 19070 0.67 0.633675
Target:  5'- gCGGCCUGcgcGCGCUGGUg---CGUCuuGCa -3'
miRNA:   3'- gGCUGGAC---CGCGACCAgaaaGCAG--UG- -5'
24226 5' -55 NC_005263.2 + 6248 0.68 0.567544
Target:  5'- gCGGCCaGGCGC-GGUCgugcCGUCGg -3'
miRNA:   3'- gGCUGGaCCGCGaCCAGaaa-GCAGUg -5'
24226 5' -55 NC_005263.2 + 25932 0.68 0.556658
Target:  5'- aCCGguucGCCcGGCGCUGGcgcaaugCgagCGUCGCg -3'
miRNA:   3'- -GGC----UGGaCCGCGACCa------GaaaGCAGUG- -5'
24226 5' -55 NC_005263.2 + 12666 0.69 0.535076
Target:  5'- gUCGGCC-GGCGCgccggGGUCg-UCGUuCGCg -3'
miRNA:   3'- -GGCUGGaCCGCGa----CCAGaaAGCA-GUG- -5'
24226 5' -55 NC_005263.2 + 17290 0.7 0.492871
Target:  5'- -aGACCUGGCGCgaGG-CagUCGcCACg -3'
miRNA:   3'- ggCUGGACCGCGa-CCaGaaAGCaGUG- -5'
24226 5' -55 NC_005263.2 + 22194 0.72 0.359475
Target:  5'- aCCgGugCUGGCGUggcccgGGgcaUUUCGUCGCg -3'
miRNA:   3'- -GG-CugGACCGCGa-----CCag-AAAGCAGUG- -5'
24226 5' -55 NC_005263.2 + 20090 0.72 0.350957
Target:  5'- cCCGAa-UGGCGuCUGGUCgaccagCGUCGCc -3'
miRNA:   3'- -GGCUggACCGC-GACCAGaaa---GCAGUG- -5'
24226 5' -55 NC_005263.2 + 18129 0.72 0.342582
Target:  5'- gCUGGCaCUGGCGCUGGUaaucaUCcUCACa -3'
miRNA:   3'- -GGCUG-GACCGCGACCAgaa--AGcAGUG- -5'
24226 5' -55 NC_005263.2 + 15833 0.73 0.334354
Target:  5'- uCCGACCUGGCGCg---CUUcgCGUgGCu -3'
miRNA:   3'- -GGCUGGACCGCGaccaGAAa-GCAgUG- -5'
24226 5' -55 NC_005263.2 + 17127 0.73 0.334354
Target:  5'- uCCGGCCUGGgGUUccucggcgaagcGGUCga-CGUCGCg -3'
miRNA:   3'- -GGCUGGACCgCGA------------CCAGaaaGCAGUG- -5'
24226 5' -55 NC_005263.2 + 2759 0.73 0.302896
Target:  5'- gCGGCCgccGUGCcGGUCgugUUCGUCACg -3'
miRNA:   3'- gGCUGGac-CGCGaCCAGa--AAGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.