miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24227 3' -58.4 NC_005263.2 + 2697 0.66 0.574264
Target:  5'- gCGCGGCCGcUCGGCAggugcaugcgcagcgCGCGugCaUCa -3'
miRNA:   3'- -GCGCUGGCuGGCCGUa--------------GUGCugG-AGc -5'
24227 3' -58.4 NC_005263.2 + 25083 0.66 0.573205
Target:  5'- uGCGGCCGAgauagUCGGuCAUacCGCGAUCUgCGa -3'
miRNA:   3'- gCGCUGGCU-----GGCC-GUA--GUGCUGGA-GC- -5'
24227 3' -58.4 NC_005263.2 + 5589 0.66 0.573205
Target:  5'- uGCGGCCGuCgGGCAUCcgcACGGCg--- -3'
miRNA:   3'- gCGCUGGCuGgCCGUAG---UGCUGgagc -5'
24227 3' -58.4 NC_005263.2 + 23126 0.66 0.573205
Target:  5'- uGCGGCCaGGCCGGCcagcAUCGuguugcCGAUCUgCGa -3'
miRNA:   3'- gCGCUGG-CUGGCCG----UAGU------GCUGGA-GC- -5'
24227 3' -58.4 NC_005263.2 + 28284 0.66 0.573205
Target:  5'- gCGCGACUcaccuugugcaGuACCGGCcgUGCGACCg-- -3'
miRNA:   3'- -GCGCUGG-----------C-UGGCCGuaGUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 8836 0.66 0.573205
Target:  5'- gGCGugCGAUCaaGCAUCGCGcgcAgCUCGg -3'
miRNA:   3'- gCGCugGCUGGc-CGUAGUGC---UgGAGC- -5'
24227 3' -58.4 NC_005263.2 + 13295 0.66 0.570033
Target:  5'- gCGCGugCGcaGCCaguugucgauguacGGCAUCGCGAgCUgCGu -3'
miRNA:   3'- -GCGCugGC--UGG--------------CCGUAGUGCUgGA-GC- -5'
24227 3' -58.4 NC_005263.2 + 9016 0.66 0.562649
Target:  5'- gCGCGuacucGCCGuCCGGCucaacgaagCGCGcuuucGCCUCGg -3'
miRNA:   3'- -GCGC-----UGGCuGGCCGua-------GUGC-----UGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 45924 0.66 0.562649
Target:  5'- gGCGACCGAa-GGCugggCGCG-UCUCGc -3'
miRNA:   3'- gCGCUGGCUggCCGua--GUGCuGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 21869 0.66 0.562649
Target:  5'- uCGCGA-CGGCCGGCAagACG-CUaUCGa -3'
miRNA:   3'- -GCGCUgGCUGGCCGUagUGCuGG-AGC- -5'
24227 3' -58.4 NC_005263.2 + 40752 0.66 0.552146
Target:  5'- cCGCGAUCGucACCGGCG--GCGGCaagUCGc -3'
miRNA:   3'- -GCGCUGGC--UGGCCGUagUGCUGg--AGC- -5'
24227 3' -58.4 NC_005263.2 + 25379 0.66 0.552146
Target:  5'- uCGCgGGCaCGuuCGGCAgcugCGCGACCUg- -3'
miRNA:   3'- -GCG-CUG-GCugGCCGUa---GUGCUGGAgc -5'
24227 3' -58.4 NC_005263.2 + 27371 0.66 0.552146
Target:  5'- aGCGAgCGGCgCGGCG--GCGGCCg-- -3'
miRNA:   3'- gCGCUgGCUG-GCCGUagUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 28935 0.66 0.552146
Target:  5'- gCGCGGCCacgagccgcGCCGGCGgaugcacggUCACGACgaCGc -3'
miRNA:   3'- -GCGCUGGc--------UGGCCGU---------AGUGCUGgaGC- -5'
24227 3' -58.4 NC_005263.2 + 12388 0.66 0.552146
Target:  5'- uCGCGACUGAagGGCGUCucgauauUGACUUUGu -3'
miRNA:   3'- -GCGCUGGCUggCCGUAGu------GCUGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 45401 0.66 0.549007
Target:  5'- gCGCGcugcgcaugcaccuGCCGAgCGGCcgCGCGAUCa-- -3'
miRNA:   3'- -GCGC--------------UGGCUgGCCGuaGUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 29599 0.66 0.541703
Target:  5'- aCGCcGCCGAUCgcgaGGCGUUGCG-CUUCGg -3'
miRNA:   3'- -GCGcUGGCUGG----CCGUAGUGCuGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 19312 0.66 0.541703
Target:  5'- aCGCGGCCcGCCGGCugugCGgugguCGAUgUCGa -3'
miRNA:   3'- -GCGCUGGcUGGCCGua--GU-----GCUGgAGC- -5'
24227 3' -58.4 NC_005263.2 + 20162 0.66 0.541703
Target:  5'- cCGCG-CCGuCCGGC-UCAuCGACgaCGa -3'
miRNA:   3'- -GCGCuGGCuGGCCGuAGU-GCUGgaGC- -5'
24227 3' -58.4 NC_005263.2 + 17042 0.66 0.531327
Target:  5'- aGCGGCUGGuggCGGCGUgaACGGCUUCa -3'
miRNA:   3'- gCGCUGGCUg--GCCGUAg-UGCUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.