miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24227 3' -58.4 NC_005263.2 + 9545 0.79 0.077375
Target:  5'- aGCGACCGACgCGGCGcUCGCGGCUUg- -3'
miRNA:   3'- gCGCUGGCUG-GCCGU-AGUGCUGGAgc -5'
24227 3' -58.4 NC_005263.2 + 3523 0.69 0.387181
Target:  5'- uGCGGCUGAUCGGCGUaaaGCGGgaUCa -3'
miRNA:   3'- gCGCUGGCUGGCCGUAg--UGCUggAGc -5'
24227 3' -58.4 NC_005263.2 + 41296 0.69 0.404014
Target:  5'- cCGCaGAUCGACaccgaaGGCGUCaagacgaagggcgGCGACUUCGa -3'
miRNA:   3'- -GCG-CUGGCUGg-----CCGUAG-------------UGCUGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 25083 0.66 0.573205
Target:  5'- uGCGGCCGAgauagUCGGuCAUacCGCGAUCUgCGa -3'
miRNA:   3'- gCGCUGGCU-----GGCC-GUA--GUGCUGGA-GC- -5'
24227 3' -58.4 NC_005263.2 + 40696 0.73 0.20523
Target:  5'- aGCGGCCGACgaacuguuCGGCGcacUCGCGACCg-- -3'
miRNA:   3'- gCGCUGGCUG--------GCCGU---AGUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 38339 0.72 0.239323
Target:  5'- gCGCGACCgugcacgcggcGACCGGCGaaAUGcGCCUCGa -3'
miRNA:   3'- -GCGCUGG-----------CUGGCCGUagUGC-UGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 39167 0.72 0.251698
Target:  5'- gCGCGACgGcAUCGGUaugccgAUCAcCGACCUCGa -3'
miRNA:   3'- -GCGCUGgC-UGGCCG------UAGU-GCUGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 30722 0.72 0.263937
Target:  5'- gCGCGGCCGcGCCGGCAgacagcuUCACGcGgUUCGg -3'
miRNA:   3'- -GCGCUGGC-UGGCCGU-------AGUGC-UgGAGC- -5'
24227 3' -58.4 NC_005263.2 + 4493 0.71 0.299172
Target:  5'- uCGCuuGGCCGAuCUGGCccAUCGCGACUUCc -3'
miRNA:   3'- -GCG--CUGGCU-GGCCG--UAGUGCUGGAGc -5'
24227 3' -58.4 NC_005263.2 + 16955 0.69 0.37851
Target:  5'- uGCG-CCGACacgcaaGGCGUacCGCGACUUCa -3'
miRNA:   3'- gCGCuGGCUGg-----CCGUA--GUGCUGGAGc -5'
24227 3' -58.4 NC_005263.2 + 14140 0.7 0.329278
Target:  5'- aGCGGCCaGCgCGGCcgCcuugGCGACUUCGg -3'
miRNA:   3'- gCGCUGGcUG-GCCGuaG----UGCUGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 20585 0.71 0.271241
Target:  5'- cCGUG-CCGACgGGCAcCGCGACCg-- -3'
miRNA:   3'- -GCGCuGGCUGgCCGUaGUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 11937 0.78 0.102147
Target:  5'- gGCaGCCGGCCGGUAUCgACGuucGCCUCGa -3'
miRNA:   3'- gCGcUGGCUGGCCGUAG-UGC---UGGAGC- -5'
24227 3' -58.4 NC_005263.2 + 38980 0.7 0.345149
Target:  5'- -aCGACgCGACCGGCAaUCGCcGCUUCa -3'
miRNA:   3'- gcGCUG-GCUGGCCGU-AGUGcUGGAGc -5'
24227 3' -58.4 NC_005263.2 + 2757 0.75 0.153182
Target:  5'- uCGCGGCCGccguGCCGGUcguguucGUCACGACCgugaagCGa -3'
miRNA:   3'- -GCGCUGGC----UGGCCG-------UAGUGCUGGa-----GC- -5'
24227 3' -58.4 NC_005263.2 + 5045 0.71 0.27057
Target:  5'- gGCGGCCGACuauuggccgacguCGGCGUCGCG-CCa-- -3'
miRNA:   3'- gCGCUGGCUG-------------GCCGUAGUGCuGGagc -5'
24227 3' -58.4 NC_005263.2 + 45336 0.69 0.369969
Target:  5'- uCGCGAggUCGugauGCCGGUcgGUCGCGACUUCu -3'
miRNA:   3'- -GCGCU--GGC----UGGCCG--UAGUGCUGGAGc -5'
24227 3' -58.4 NC_005263.2 + 40266 0.69 0.387181
Target:  5'- gCGCGACgCGGCCGGCcaaccgAUCgACGAaUUCGa -3'
miRNA:   3'- -GCGCUG-GCUGGCCG------UAG-UGCUgGAGC- -5'
24227 3' -58.4 NC_005263.2 + 2565 0.75 0.162013
Target:  5'- aCGCGAgaCGAUCGGCaAUCACGGCCg-- -3'
miRNA:   3'- -GCGCUg-GCUGGCCG-UAGUGCUGGagc -5'
24227 3' -58.4 NC_005263.2 + 20652 0.72 0.239323
Target:  5'- aGUGGCCGcGCCGcuCGUCGCGGCCgUCGa -3'
miRNA:   3'- gCGCUGGC-UGGCc-GUAGUGCUGG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.