miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24228 3' -55 NC_005263.2 + 20270 0.65 0.713975
Target:  5'- aGCGgcGCCGAau-UCAacGCGUGCCGcGa -3'
miRNA:   3'- -UGCuaCGGCUacuAGU--CGCACGGCuC- -5'
24228 3' -55 NC_005263.2 + 39873 0.65 0.713975
Target:  5'- uGCGAccacGCCG-UGGUCGGgGUcGCCGGc -3'
miRNA:   3'- -UGCUa---CGGCuACUAGUCgCA-CGGCUc -5'
24228 3' -55 NC_005263.2 + 25172 0.65 0.713975
Target:  5'- uCGAcucGCCGGUcgGAUUugcguGCGUGCCGAu -3'
miRNA:   3'- uGCUa--CGGCUA--CUAGu----CGCACGGCUc -5'
24228 3' -55 NC_005263.2 + 44313 0.65 0.713975
Target:  5'- uCGAcacUGaCgCGAUGGUCGGCGUGUgGGa -3'
miRNA:   3'- uGCU---AC-G-GCUACUAGUCGCACGgCUc -5'
24228 3' -55 NC_005263.2 + 32629 0.66 0.703081
Target:  5'- -gGAUGUCGGUaGGcagCAGCG-GCCGAa -3'
miRNA:   3'- ugCUACGGCUA-CUa--GUCGCaCGGCUc -5'
24228 3' -55 NC_005263.2 + 14161 0.66 0.68109
Target:  5'- gGCGAcuucggGCCGgcGGcCGGUGUGCgCGAGc -3'
miRNA:   3'- -UGCUa-----CGGCuaCUaGUCGCACG-GCUC- -5'
24228 3' -55 NC_005263.2 + 31982 0.66 0.68109
Target:  5'- cCGAUGuuGAUGAgugccgucUCGGC-UGCCGuAGc -3'
miRNA:   3'- uGCUACggCUACU--------AGUCGcACGGC-UC- -5'
24228 3' -55 NC_005263.2 + 27327 0.66 0.670017
Target:  5'- cCGAcgcGCCGAcGAUCAGCGgcgcgGCCa-- -3'
miRNA:   3'- uGCUa--CGGCUaCUAGUCGCa----CGGcuc -5'
24228 3' -55 NC_005263.2 + 29221 0.67 0.647773
Target:  5'- cGCGuauuUGCCGucggcGcgCAGCGgcgcGCCGAGg -3'
miRNA:   3'- -UGCu---ACGGCua---CuaGUCGCa---CGGCUC- -5'
24228 3' -55 NC_005263.2 + 43359 0.67 0.636623
Target:  5'- uCGAUGUCGGUGAaagCuGGCGUGCucgCGGGc -3'
miRNA:   3'- uGCUACGGCUACUa--G-UCGCACG---GCUC- -5'
24228 3' -55 NC_005263.2 + 41491 0.67 0.636623
Target:  5'- gGCGAgucgGCCGucGUGAUCcacGGCGaGCuCGAGa -3'
miRNA:   3'- -UGCUa---CGGC--UACUAG---UCGCaCG-GCUC- -5'
24228 3' -55 NC_005263.2 + 28611 0.67 0.625469
Target:  5'- uCGAUGCUGAucguaucgcucgUGAUCGGCGUGagcaCGu- -3'
miRNA:   3'- uGCUACGGCU------------ACUAGUCGCACg---GCuc -5'
24228 3' -55 NC_005263.2 + 20779 0.67 0.614321
Target:  5'- cGCGccGCUGAUcGUCGGCGcGUCGGGu -3'
miRNA:   3'- -UGCuaCGGCUAcUAGUCGCaCGGCUC- -5'
24228 3' -55 NC_005263.2 + 24847 0.67 0.614321
Target:  5'- gGCGGUGCCGGUGcgCcagccGGCGgcuacgGCCaGGa -3'
miRNA:   3'- -UGCUACGGCUACuaG-----UCGCa-----CGGcUC- -5'
24228 3' -55 NC_005263.2 + 104 0.67 0.603189
Target:  5'- cCGGUGCCGGU----AGuCGUGUCGAGg -3'
miRNA:   3'- uGCUACGGCUAcuagUC-GCACGGCUC- -5'
24228 3' -55 NC_005263.2 + 3195 0.68 0.581011
Target:  5'- cACGAgGCCGGUGAgccggccCGGCGcGCCGc- -3'
miRNA:   3'- -UGCUaCGGCUACUa------GUCGCaCGGCuc -5'
24228 3' -55 NC_005263.2 + 30768 0.68 0.581011
Target:  5'- cGCGAUGCCGAacGUCgaagccaccGGCGccggGCCGAa -3'
miRNA:   3'- -UGCUACGGCUacUAG---------UCGCa---CGGCUc -5'
24228 3' -55 NC_005263.2 + 23525 0.68 0.581011
Target:  5'- uGCGc--CCGAcaUGAuauUCGGCGUGCCGAc -3'
miRNA:   3'- -UGCuacGGCU--ACU---AGUCGCACGGCUc -5'
24228 3' -55 NC_005263.2 + 10923 0.68 0.537242
Target:  5'- -gGAUGCCGcacGUGAUCGcGuCGUGCgGGGu -3'
miRNA:   3'- ugCUACGGC---UACUAGU-C-GCACGgCUC- -5'
24228 3' -55 NC_005263.2 + 19673 0.68 0.537242
Target:  5'- cCGG-GCCGGUGAagcUCAGCGaugUGCUGAa -3'
miRNA:   3'- uGCUaCGGCUACU---AGUCGC---ACGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.