miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24228 5' -58.2 NC_005263.2 + 7192 0.65 0.56484
Target:  5'- gGCGCAguagauaccgagucGCGCGAccAUCGCCgGCGACc -3'
miRNA:   3'- gCGUGU--------------CGUGCUccUAGCGG-CGCUGc -5'
24228 5' -58.2 NC_005263.2 + 6391 0.66 0.557403
Target:  5'- cCGCGuCgAGUACGAGGAuguucuccUUGCCcGCGuACGg -3'
miRNA:   3'- -GCGU-G-UCGUGCUCCU--------AGCGG-CGC-UGC- -5'
24228 5' -58.2 NC_005263.2 + 20725 0.66 0.557403
Target:  5'- cCGguCAGCGCGccGGcCGCCGCcGCGc -3'
miRNA:   3'- -GCguGUCGUGCucCUaGCGGCGcUGC- -5'
24228 5' -58.2 NC_005263.2 + 15556 0.66 0.554224
Target:  5'- gGCGaguaAGCGCGuGGccggccugccgacaGUCGCCGCGuuCGa -3'
miRNA:   3'- gCGUg---UCGUGCuCC--------------UAGCGGCGCu-GC- -5'
24228 5' -58.2 NC_005263.2 + 14099 0.66 0.546827
Target:  5'- gGUACcggcuGCGCGGcGGUCGCCGUcGCGa -3'
miRNA:   3'- gCGUGu----CGUGCUcCUAGCGGCGcUGC- -5'
24228 5' -58.2 NC_005263.2 + 6534 0.66 0.546827
Target:  5'- gCGCGCAuacGCGCGAaagcucGcAUCGCCGCcACGg -3'
miRNA:   3'- -GCGUGU---CGUGCU------CcUAGCGGCGcUGC- -5'
24228 5' -58.2 NC_005263.2 + 42130 0.66 0.546827
Target:  5'- uCGUGCuGCgcgACGAGGcgUGUCGCGAgGu -3'
miRNA:   3'- -GCGUGuCG---UGCUCCuaGCGGCGCUgC- -5'
24228 5' -58.2 NC_005263.2 + 11614 0.66 0.546827
Target:  5'- gGCGCAGCACuucgccuucGAcCGCCGUGugGu -3'
miRNA:   3'- gCGUGUCGUGcuc------CUaGCGGCGCugC- -5'
24228 5' -58.2 NC_005263.2 + 35612 0.66 0.546827
Target:  5'- aGC-CGGCGCGcAGGAU-GCCGCaauGCGc -3'
miRNA:   3'- gCGuGUCGUGC-UCCUAgCGGCGc--UGC- -5'
24228 5' -58.2 NC_005263.2 + 34016 0.66 0.545774
Target:  5'- cCGCGCAGC-CGGuaccagccgacauGGGcCGgCGCGGCGc -3'
miRNA:   3'- -GCGUGUCGuGCU-------------CCUaGCgGCGCUGC- -5'
24228 5' -58.2 NC_005263.2 + 36099 0.66 0.536317
Target:  5'- gCGCGCcGuCGCGuuGAUgGCCGCGuCGu -3'
miRNA:   3'- -GCGUGuC-GUGCucCUAgCGGCGCuGC- -5'
24228 5' -58.2 NC_005263.2 + 21627 0.66 0.536317
Target:  5'- gGCGCAGUGCGGcGA-CGC-GCGGCGu -3'
miRNA:   3'- gCGUGUCGUGCUcCUaGCGgCGCUGC- -5'
24228 5' -58.2 NC_005263.2 + 27615 0.66 0.536317
Target:  5'- aCGUGCGGCGCGAcGGUCgaccacucaugGCCGauCGACGu -3'
miRNA:   3'- -GCGUGUCGUGCUcCUAG-----------CGGC--GCUGC- -5'
24228 5' -58.2 NC_005263.2 + 19476 0.66 0.53527
Target:  5'- cCGCACGGCGCucGAgcaguacGGGUUGgaCGUGACGa -3'
miRNA:   3'- -GCGUGUCGUG--CU-------CCUAGCg-GCGCUGC- -5'
24228 5' -58.2 NC_005263.2 + 15592 0.66 0.525877
Target:  5'- aGCGCGgccgguGCACGAGcGAUaCGaaCGCGGCGa -3'
miRNA:   3'- gCGUGU------CGUGCUC-CUA-GCg-GCGCUGC- -5'
24228 5' -58.2 NC_005263.2 + 15428 0.66 0.525877
Target:  5'- uGCugAcGCACGucGAcaUCGCCGcCGACc -3'
miRNA:   3'- gCGugU-CGUGCucCU--AGCGGC-GCUGc -5'
24228 5' -58.2 NC_005263.2 + 29076 0.66 0.525877
Target:  5'- cCGCuACGGCGCGAuaGGcgCGguucaGCGACGg -3'
miRNA:   3'- -GCG-UGUCGUGCU--CCuaGCgg---CGCUGC- -5'
24228 5' -58.2 NC_005263.2 + 10673 0.66 0.525877
Target:  5'- cCGCGCGcGCcgacguaugacgACGAGGAcgGCCGCG-CGa -3'
miRNA:   3'- -GCGUGU-CG------------UGCUCCUagCGGCGCuGC- -5'
24228 5' -58.2 NC_005263.2 + 37917 0.66 0.525877
Target:  5'- aCGaACAGCggGCGcAGGcgCGCCGcCGGCa -3'
miRNA:   3'- -GCgUGUCG--UGC-UCCuaGCGGC-GCUGc -5'
24228 5' -58.2 NC_005263.2 + 32490 0.66 0.515516
Target:  5'- gGCGC-GCACGAacuUCGCCGCGuuCGu -3'
miRNA:   3'- gCGUGuCGUGCUccuAGCGGCGCu-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.