miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24229 3' -56.1 NC_005263.2 + 11899 0.66 0.644748
Target:  5'- cGCCGgGCGCCUGcgcgcUGgcGUCCUg -3'
miRNA:   3'- uCGGCgCGUGGGCuauu-ACuuCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 7181 0.66 0.644748
Target:  5'- cGCUGCGaUACCCGGguauGUGcGGCUgCg -3'
miRNA:   3'- uCGGCGC-GUGGGCUau--UACuUCGGgG- -5'
24229 3' -56.1 NC_005263.2 + 39246 0.66 0.633675
Target:  5'- gGGCCGCGUAuCCCGucggccGAGCUgCg -3'
miRNA:   3'- -UCGGCGCGU-GGGCuauuacUUCGGgG- -5'
24229 3' -56.1 NC_005263.2 + 22184 0.66 0.633675
Target:  5'- cGCCGgGCgaaCCGGUGcUGGcguGGCCCg -3'
miRNA:   3'- uCGGCgCGug-GGCUAUuACU---UCGGGg -5'
24229 3' -56.1 NC_005263.2 + 17903 0.66 0.62703
Target:  5'- cGGCgGCGCG-CCGAUcagcaucaacGGCCCCg -3'
miRNA:   3'- -UCGgCGCGUgGGCUAuuacu-----UCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 17828 0.66 0.622601
Target:  5'- uGCCGCGCgcgGCCCGAUugcGcAGCgCUu -3'
miRNA:   3'- uCGGCGCG---UGGGCUAuuaCuUCGgGG- -5'
24229 3' -56.1 NC_005263.2 + 33934 0.66 0.611535
Target:  5'- cAGCuCGCGCACaCCGGccgcc-GGCCCg -3'
miRNA:   3'- -UCG-GCGCGUG-GGCUauuacuUCGGGg -5'
24229 3' -56.1 NC_005263.2 + 9648 0.66 0.611535
Target:  5'- uGGCuUGCGCugUCGAgcgcAAUGucGCCgCCg -3'
miRNA:   3'- -UCG-GCGCGugGGCUa---UUACuuCGG-GG- -5'
24229 3' -56.1 NC_005263.2 + 9694 0.66 0.607114
Target:  5'- cGCCgGCGCACCCGAcgcgcgacAGUGcgucgaucaguucGGCCUCg -3'
miRNA:   3'- uCGG-CGCGUGGGCUa-------UUACu------------UCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 7500 0.66 0.601591
Target:  5'- uGCCGCGCACCgcugacggCGAggugcguacagggcgGAUGGcagaucaucaAGUCCCa -3'
miRNA:   3'- uCGGCGCGUGG--------GCUa--------------UUACU----------UCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 40417 0.66 0.600488
Target:  5'- cGCCGCGCggccgacucgaACCCGGU--UGAagacgggcaaaGGCCgCa -3'
miRNA:   3'- uCGGCGCG-----------UGGGCUAuuACU-----------UCGGgG- -5'
24229 3' -56.1 NC_005263.2 + 37272 0.66 0.600488
Target:  5'- uGCCGCGUaACgUGAUAcUGAugcGUCCCu -3'
miRNA:   3'- uCGGCGCG-UGgGCUAUuACUu--CGGGG- -5'
24229 3' -56.1 NC_005263.2 + 30599 0.66 0.600488
Target:  5'- uAGCCGC-CGCCUGAUcGAUcGAcGCgCCg -3'
miRNA:   3'- -UCGGCGcGUGGGCUA-UUA-CUuCGgGG- -5'
24229 3' -56.1 NC_005263.2 + 21439 0.67 0.589467
Target:  5'- aAGUCGCcUGCCCGAauccgGAAGCgCCa -3'
miRNA:   3'- -UCGGCGcGUGGGCUauua-CUUCGgGG- -5'
24229 3' -56.1 NC_005263.2 + 26194 0.67 0.588367
Target:  5'- cGGCCGCGCggcggccGCgCGAUGcgGcGGCCg- -3'
miRNA:   3'- -UCGGCGCG-------UGgGCUAUuaCuUCGGgg -5'
24229 3' -56.1 NC_005263.2 + 42845 0.67 0.588367
Target:  5'- uGCCGCuGCcggcaccGCCCGcUGAUGAcGGCgCCu -3'
miRNA:   3'- uCGGCG-CG-------UGGGCuAUUACU-UCGgGG- -5'
24229 3' -56.1 NC_005263.2 + 27327 0.67 0.578483
Target:  5'- cGUCgGCGC-CCCGuucagGAAGCCuCCg -3'
miRNA:   3'- uCGG-CGCGuGGGCuauuaCUUCGG-GG- -5'
24229 3' -56.1 NC_005263.2 + 742 0.67 0.556658
Target:  5'- uGCCGUugcgcccugcaGCACCUGAUAGgugccuguccacUGcAGCCCUu -3'
miRNA:   3'- uCGGCG-----------CGUGGGCUAUU------------ACuUCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 26926 0.67 0.554488
Target:  5'- cGCCGCGCGCguCCGcgucc---GCCCCg -3'
miRNA:   3'- uCGGCGCGUG--GGCuauuacuuCGGGG- -5'
24229 3' -56.1 NC_005263.2 + 47264 0.67 0.545833
Target:  5'- cGCUGUccGCGCUCGGUAGUGAcgugcGCgCCg -3'
miRNA:   3'- uCGGCG--CGUGGGCUAUUACUu----CGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.