miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24229 5' -59.7 NC_005263.2 + 25817 0.66 0.425793
Target:  5'- -aACGGC-CCGCAUUGCgGGccguuugucguuucuGCGCa -3'
miRNA:   3'- uaUGCCGuGGCGUGACGgUCu--------------CGCGc -5'
24229 5' -59.7 NC_005263.2 + 31262 0.66 0.424846
Target:  5'- -cGCGGCGCCGgGCagGUCGaAGUGCu -3'
miRNA:   3'- uaUGCCGUGGCgUGa-CGGUcUCGCGc -5'
24229 5' -59.7 NC_005263.2 + 20410 0.66 0.424846
Target:  5'- uAUGCGGcCGCCG-GC-GCCGGcGCGCa -3'
miRNA:   3'- -UAUGCC-GUGGCgUGaCGGUCuCGCGc -5'
24229 5' -59.7 NC_005263.2 + 42890 0.66 0.424846
Target:  5'- -aAUGGCguGCCGCGCgcucGCCuggacgcGAGUGCGc -3'
miRNA:   3'- uaUGCCG--UGGCGUGa---CGGu------CUCGCGC- -5'
24229 5' -59.7 NC_005263.2 + 14047 0.66 0.415446
Target:  5'- -cACgGGCGCCGCGuCgagcGCauuGAGCGCGc -3'
miRNA:   3'- uaUG-CCGUGGCGU-Ga---CGgu-CUCGCGC- -5'
24229 5' -59.7 NC_005263.2 + 24538 0.66 0.415446
Target:  5'- aGUGCGGguUCGUGcCUGCCGGcuGCGgGa -3'
miRNA:   3'- -UAUGCCguGGCGU-GACGGUCu-CGCgC- -5'
24229 5' -59.7 NC_005263.2 + 24071 0.66 0.415446
Target:  5'- --uCGGCcguGCUGauccaGCUGCC-GAGCGCGu -3'
miRNA:   3'- uauGCCG---UGGCg----UGACGGuCUCGCGC- -5'
24229 5' -59.7 NC_005263.2 + 6843 0.66 0.415446
Target:  5'- -cACuGCACUGCGCgGCCAucGAGCGg- -3'
miRNA:   3'- uaUGcCGUGGCGUGaCGGU--CUCGCgc -5'
24229 5' -59.7 NC_005263.2 + 6933 0.66 0.415446
Target:  5'- -aACaG-ACCGCACUGCguGAGCGg- -3'
miRNA:   3'- uaUGcCgUGGCGUGACGguCUCGCgc -5'
24229 5' -59.7 NC_005263.2 + 24793 0.66 0.406175
Target:  5'- -gGCGGCucGCCGgGC-GUCGGcGGCGCGu -3'
miRNA:   3'- uaUGCCG--UGGCgUGaCGGUC-UCGCGC- -5'
24229 5' -59.7 NC_005263.2 + 9637 0.66 0.406175
Target:  5'- -cGCGGUAaaucuggcUUGCGCUGUC-GAGCGCa -3'
miRNA:   3'- uaUGCCGU--------GGCGUGACGGuCUCGCGc -5'
24229 5' -59.7 NC_005263.2 + 4945 0.66 0.406175
Target:  5'- -gGCuGUGCCGCAC-GCCAGcGCGaCGa -3'
miRNA:   3'- uaUGcCGUGGCGUGaCGGUCuCGC-GC- -5'
24229 5' -59.7 NC_005263.2 + 20953 0.66 0.405255
Target:  5'- -gACGGC-CgCGCGCUGUCGGAcaucgccGaCGCGg -3'
miRNA:   3'- uaUGCCGuG-GCGUGACGGUCU-------C-GCGC- -5'
24229 5' -59.7 NC_005263.2 + 47523 0.66 0.397035
Target:  5'- -cGCGGCGCUcgaauaccuGCAgCUGUCcagcaAGGGCGCGu -3'
miRNA:   3'- uaUGCCGUGG---------CGU-GACGG-----UCUCGCGC- -5'
24229 5' -59.7 NC_005263.2 + 9365 0.66 0.397035
Target:  5'- -gGCGaGCGCCgGCgGCUGCgGGAauuucaGCGCGg -3'
miRNA:   3'- uaUGC-CGUGG-CG-UGACGgUCU------CGCGC- -5'
24229 5' -59.7 NC_005263.2 + 28350 0.66 0.397035
Target:  5'- -cACGGcCACgaGCGCcGCCAGcGCGCc -3'
miRNA:   3'- uaUGCC-GUGg-CGUGaCGGUCuCGCGc -5'
24229 5' -59.7 NC_005263.2 + 25886 0.66 0.397035
Target:  5'- gAUACGGUACCGCACgucgcgacgaaaUGCCccGGGC-Ca -3'
miRNA:   3'- -UAUGCCGUGGCGUG------------ACGGu-CUCGcGc -5'
24229 5' -59.7 NC_005263.2 + 15265 0.66 0.397035
Target:  5'- cUGCGGCuugucGCgGCGCUGa-AGGGCGCc -3'
miRNA:   3'- uAUGCCG-----UGgCGUGACggUCUCGCGc -5'
24229 5' -59.7 NC_005263.2 + 16485 0.66 0.388027
Target:  5'- -gACGGCGCUGCGCcGCgCGGccGuCGCGa -3'
miRNA:   3'- uaUGCCGUGGCGUGaCG-GUCu-C-GCGC- -5'
24229 5' -59.7 NC_005263.2 + 672 0.66 0.388027
Target:  5'- ---aGGCACgGUAgUGCCcgugcucgguGAGCGCGa -3'
miRNA:   3'- uaugCCGUGgCGUgACGGu---------CUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.