miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 5' -59.6 NC_005263.2 + 26230 0.66 0.441865
Target:  5'- aCUCGGUcGAuaGCGucUUGccgGCCGUCGCg -3'
miRNA:   3'- -GAGCCA-CUcgCGCu-AGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 26092 0.66 0.441865
Target:  5'- -gUGGUGAccggcacaccagGCGUGA-CG-GCUGCCGCc -3'
miRNA:   3'- gaGCCACU------------CGCGCUaGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 14092 0.67 0.432447
Target:  5'- gUCGGcUGGuaccggcuGCGCGG-CGgucGCCGUCGCg -3'
miRNA:   3'- gAGCC-ACU--------CGCGCUaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 16000 0.67 0.432447
Target:  5'- uCUCGa--AGCGCucGAUCGcaccgacGCCGCCGCa -3'
miRNA:   3'- -GAGCcacUCGCG--CUAGCa------CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 18279 0.67 0.413968
Target:  5'- -cCGGgcGAuGCGCucGUCGUGCgCGCUGCa -3'
miRNA:   3'- gaGCCa-CU-CGCGc-UAGCACG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 9222 0.67 0.413968
Target:  5'- -aCGGUGccgucggcguucAGCacgGCGAaCGUGCCGaCCGUg -3'
miRNA:   3'- gaGCCAC------------UCG---CGCUaGCACGGC-GGCG- -5'
24230 5' -59.6 NC_005263.2 + 14180 0.67 0.413968
Target:  5'- -cCGGUGuGCGCGAgcugCGUG-CGCUucuuuGCg -3'
miRNA:   3'- gaGCCACuCGCGCUa---GCACgGCGG-----CG- -5'
24230 5' -59.6 NC_005263.2 + 39100 0.67 0.395983
Target:  5'- -aCGGcGAguacGCGCGAcUCGUGC-GCCGUg -3'
miRNA:   3'- gaGCCaCU----CGCGCU-AGCACGgCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 41244 0.67 0.390687
Target:  5'- aCUC-GUGcGCGagggcuaccugucgcCGGUCGUGUCGCCGUc -3'
miRNA:   3'- -GAGcCACuCGC---------------GCUAGCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 26460 0.67 0.387181
Target:  5'- gCUUGGU--GCGCGA--GUGCCauacGCCGCg -3'
miRNA:   3'- -GAGCCAcuCGCGCUagCACGG----CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 12063 0.68 0.37851
Target:  5'- gUCGGUcgaccgagacGGGCGCGAguacCuUGUCGUCGCg -3'
miRNA:   3'- gAGCCA----------CUCGCGCUa---GcACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 33888 0.68 0.369969
Target:  5'- gUCGGauucguUGcGCGCGAaCGgcacGCCGUCGCg -3'
miRNA:   3'- gAGCC------ACuCGCGCUaGCa---CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 3202 0.68 0.369969
Target:  5'- -cCGGUGAGC-CGGccCG-GCgCGCCGCc -3'
miRNA:   3'- gaGCCACUCGcGCUa-GCaCG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 8737 0.68 0.353288
Target:  5'- aCUCGGcGAGCGgGGUCGaGacguuuuuaaCGCUGCg -3'
miRNA:   3'- -GAGCCaCUCGCgCUAGCaCg---------GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 30345 0.68 0.353288
Target:  5'- -gCGcGUgccGAGCGCGGcCGcGCUGCCGCc -3'
miRNA:   3'- gaGC-CA---CUCGCGCUaGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 33467 0.68 0.353288
Target:  5'- aCUCGGUcAGCGUGAUCacgaGCCcuucGUCGCg -3'
miRNA:   3'- -GAGCCAcUCGCGCUAGca--CGG----CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 20018 0.68 0.345149
Target:  5'- aUCGGcc-GCGCcaacacacggGAUCGUGCCGCgCGUu -3'
miRNA:   3'- gAGCCacuCGCG----------CUAGCACGGCG-GCG- -5'
24230 5' -59.6 NC_005263.2 + 14519 0.68 0.345149
Target:  5'- gCUCGGcucgaaagaGGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCCac-------UCGCGCuaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 31645 0.68 0.343537
Target:  5'- uCUCGGUGuucgucAGUGCGAguaccaugccagCGagGcCCGCCGCg -3'
miRNA:   3'- -GAGCCAC------UCGCGCUa-----------GCa-C-GGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 25786 0.68 0.337145
Target:  5'- aUCGGgcaGGcCGCGAaCGUacgcGCCGCCGUg -3'
miRNA:   3'- gAGCCac-UC-GCGCUaGCA----CGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.