miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24231 3' -55 NC_005263.2 + 18669 0.65 0.702921
Target:  5'- gCCGCUGCGGCguCCgUCGGCgCgccAGCa -3'
miRNA:   3'- aGGUGACGUCG--GGaAGCUG-GaacUCG- -5'
24231 3' -55 NC_005263.2 + 38029 0.65 0.702921
Target:  5'- cCCACgaggcggGCAGCUUggcgUCG-CCgaGAGCg -3'
miRNA:   3'- aGGUGa------CGUCGGGa---AGCuGGaaCUCG- -5'
24231 3' -55 NC_005263.2 + 18925 0.66 0.691907
Target:  5'- cCCACUGCGGCacaccagucaCUUCGACaacgcacGGGUc -3'
miRNA:   3'- aGGUGACGUCGg---------GAAGCUGgaa----CUCG- -5'
24231 3' -55 NC_005263.2 + 32698 0.66 0.658553
Target:  5'- gCCGCUGCuGCCUacCGACauccgcGAGCu -3'
miRNA:   3'- aGGUGACGuCGGGaaGCUGgaa---CUCG- -5'
24231 3' -55 NC_005263.2 + 27449 0.66 0.64737
Target:  5'- -aCACUGCgAGCCCgaugUC-ACCUUcugccggaucGAGCa -3'
miRNA:   3'- agGUGACG-UCGGGa---AGcUGGAA----------CUCG- -5'
24231 3' -55 NC_005263.2 + 46099 0.67 0.636171
Target:  5'- gCCGCUGCGGaUUUggcgCGGCCUaggacagucggUGAGCa -3'
miRNA:   3'- aGGUGACGUCgGGAa---GCUGGA-----------ACUCG- -5'
24231 3' -55 NC_005263.2 + 42247 0.67 0.613774
Target:  5'- aCCGcCUGCGGCUcgaCUUCGACCgcacgacGGCc -3'
miRNA:   3'- aGGU-GACGUCGG---GAAGCUGGaac----UCG- -5'
24231 3' -55 NC_005263.2 + 32289 0.68 0.580326
Target:  5'- cCCGCUGCAGCUUUacacgcugaucUCG-CCgcaGGGCa -3'
miRNA:   3'- aGGUGACGUCGGGA-----------AGCuGGaa-CUCG- -5'
24231 3' -55 NC_005263.2 + 19169 0.68 0.580326
Target:  5'- aUCCGCcggcGCGGCUCgUCGGCCgcgcgUGGGa -3'
miRNA:   3'- -AGGUGa---CGUCGGGaAGCUGGa----ACUCg -5'
24231 3' -55 NC_005263.2 + 41641 0.68 0.580326
Target:  5'- -gCACUGCGGCCCacgcgcucgcUCGugCUcuGGCg -3'
miRNA:   3'- agGUGACGUCGGGa---------AGCugGAacUCG- -5'
24231 3' -55 NC_005263.2 + 38658 0.68 0.569253
Target:  5'- gCCGCUGCccgugguGCCCgucuugaUCGGCCc-GGGCg -3'
miRNA:   3'- aGGUGACGu------CGGGa------AGCUGGaaCUCG- -5'
24231 3' -55 NC_005263.2 + 42258 0.68 0.569253
Target:  5'- -aCGCUGUuGCCC-UCGGgCgUGAGCg -3'
miRNA:   3'- agGUGACGuCGGGaAGCUgGaACUCG- -5'
24231 3' -55 NC_005263.2 + 8457 0.68 0.558233
Target:  5'- gCCGgcGCGGgCCgcgUCGACCUggcGAGCg -3'
miRNA:   3'- aGGUgaCGUCgGGa--AGCUGGAa--CUCG- -5'
24231 3' -55 NC_005263.2 + 22608 0.69 0.493661
Target:  5'- gCCucuUUGCGGCCCgucUCGGCaucGAGCa -3'
miRNA:   3'- aGGu--GACGUCGGGa--AGCUGgaaCUCG- -5'
24231 3' -55 NC_005263.2 + 3425 0.69 0.472886
Target:  5'- aCUGCUGCGGCgCCgucgCGACCUgguUGAccuGCg -3'
miRNA:   3'- aGGUGACGUCG-GGaa--GCUGGA---ACU---CG- -5'
24231 3' -55 NC_005263.2 + 4521 0.69 0.472886
Target:  5'- uUCCGCgucGUAGCCCaUCGucaucauuACCgUGAGCc -3'
miRNA:   3'- -AGGUGa--CGUCGGGaAGC--------UGGaACUCG- -5'
24231 3' -55 NC_005263.2 + 38220 0.7 0.45256
Target:  5'- aCUGCUGCAGCUUgugCGACCagugccGGGCa -3'
miRNA:   3'- aGGUGACGUCGGGaa-GCUGGaa----CUCG- -5'
24231 3' -55 NC_005263.2 + 41916 0.71 0.394616
Target:  5'- gCCGa-GCAGCCCgaauUCGACCUgcgcgugauucUGGGCc -3'
miRNA:   3'- aGGUgaCGUCGGGa---AGCUGGA-----------ACUCG- -5'
24231 3' -55 NC_005263.2 + 40568 0.71 0.377292
Target:  5'- cCCGCUGCAGCCCcguacuugacuuucUUUGAUCUgucccgcuuaguagGAGUg -3'
miRNA:   3'- aGGUGACGUCGGG--------------AAGCUGGAa-------------CUCG- -5'
24231 3' -55 NC_005263.2 + 2944 0.73 0.30936
Target:  5'- gCCGCUGUAGCCCUgCaGCUgcgcGAGCg -3'
miRNA:   3'- aGGUGACGUCGGGAaGcUGGaa--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.