miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24231 5' -58 NC_005263.2 + 15868 0.67 0.448578
Target:  5'- aCGGUGUcGGA-CGAGCAGC-GCGCa- -3'
miRNA:   3'- -GCCGCGuCCUgGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 38135 0.67 0.438743
Target:  5'- gGGCGcCAGGuAUCGAACGGgUcggcGCACUg -3'
miRNA:   3'- gCCGC-GUCC-UGGCUUGUCgA----CGUGAa -5'
24231 5' -58 NC_005263.2 + 3552 0.67 0.423267
Target:  5'- aCGGCGaAGGACaguaCGAGCaacgcuacauggucaAGCUGCACg- -3'
miRNA:   3'- -GCCGCgUCCUG----GCUUG---------------UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 45740 0.67 0.41945
Target:  5'- uCGGUGCugAGGGuuGGcACGGCcUGCGCUg -3'
miRNA:   3'- -GCCGCG--UCCUggCU-UGUCG-ACGUGAa -5'
24231 5' -58 NC_005263.2 + 39794 0.67 0.409998
Target:  5'- uGGCGCAGGcagGCCGAcCAGgaaGCGCg- -3'
miRNA:   3'- gCCGCGUCC---UGGCUuGUCga-CGUGaa -5'
24231 5' -58 NC_005263.2 + 20898 0.67 0.409998
Target:  5'- aGGCGCAcGGgaugacGCCGGAUGGCgUGUACg- -3'
miRNA:   3'- gCCGCGU-CC------UGGCUUGUCG-ACGUGaa -5'
24231 5' -58 NC_005263.2 + 36382 0.67 0.40068
Target:  5'- uGGCGCAGGACgucGCGugucGCUGCAUg- -3'
miRNA:   3'- gCCGCGUCCUGgcuUGU----CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 31775 0.68 0.391498
Target:  5'- cCGGCaucGCGGGugCGGuacuCGGCgucgGCGCUg -3'
miRNA:   3'- -GCCG---CGUCCugGCUu---GUCGa---CGUGAa -5'
24231 5' -58 NC_005263.2 + 14792 0.68 0.38877
Target:  5'- -cGCGCGGGAagaucgcgccaaauUCGGACAGCgGCACc- -3'
miRNA:   3'- gcCGCGUCCU--------------GGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 44191 0.68 0.382454
Target:  5'- gGGCGCcgccGCCGAGCAGC-GCACc- -3'
miRNA:   3'- gCCGCGucc-UGGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 41780 0.68 0.382454
Target:  5'- uCGGCGCGGGcgacucgcgcGCCGGACuaugGGuUUGCACg- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5'
24231 5' -58 NC_005263.2 + 25251 0.68 0.382454
Target:  5'- aGGCuuguacGCAGcACCGAuCAGCUGCAUg- -3'
miRNA:   3'- gCCG------CGUCcUGGCUuGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 6107 0.68 0.374435
Target:  5'- aGGCGguGaguucguacgauucGACCGAACGuuauccgcguucgguGCUGCGCUUc -3'
miRNA:   3'- gCCGCguC--------------CUGGCUUGU---------------CGACGUGAA- -5'
24231 5' -58 NC_005263.2 + 6628 0.68 0.35617
Target:  5'- uCGGCGCGG--UCGAGCAGUcGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 16920 0.69 0.307508
Target:  5'- gCGGCGCGGcGCCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
24231 5' -58 NC_005263.2 + 30791 0.7 0.29991
Target:  5'- cCGGCGCcGGGCCGAAUucGC-GCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 19178 0.7 0.29991
Target:  5'- uCGGCGCGGccGACCG-GCAGUgcguUGCGCa- -3'
miRNA:   3'- -GCCGCGUC--CUGGCuUGUCG----ACGUGaa -5'
24231 5' -58 NC_005263.2 + 10063 0.7 0.292457
Target:  5'- uGGCGCGcaagacGGcgaACCGGACGGCgUGCGCa- -3'
miRNA:   3'- gCCGCGU------CC---UGGCUUGUCG-ACGUGaa -5'
24231 5' -58 NC_005263.2 + 10152 0.71 0.257362
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 23564 0.71 0.250119
Target:  5'- gCGGCGCAGGucaauucACCGAGUGGCaaGCACUg -3'
miRNA:   3'- -GCCGCGUCC-------UGGCUUGUCGa-CGUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.