miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24233 5' -53.8 NC_005263.2 + 43359 0.66 0.737271
Target:  5'- uCGAugUCGGUGaaaGCuGGCGUgcUCGCGGGCg -3'
miRNA:   3'- -GCU--AGUCGCag-CG-UCGCA--AGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 14126 0.67 0.726533
Target:  5'- gCGAUCGuaGcCGCAGCGgccagCGCGGc- -3'
miRNA:   3'- -GCUAGUcgCaGCGUCGCaa---GCGCUug -5'
24233 5' -53.8 NC_005263.2 + 3385 0.67 0.726533
Target:  5'- uCGAcgGGCGUCGCcGuCGUU-GCGGGCa -3'
miRNA:   3'- -GCUagUCGCAGCGuC-GCAAgCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 32475 0.67 0.726533
Target:  5'- aGAUCGGCGUCGgC-GCaUUCaGCGAcgGCa -3'
miRNA:   3'- gCUAGUCGCAGC-GuCGcAAG-CGCU--UG- -5'
24233 5' -53.8 NC_005263.2 + 29306 0.67 0.726533
Target:  5'- gGGUCGGCaugCGCAucGCGcgCgGCGAGCa -3'
miRNA:   3'- gCUAGUCGca-GCGU--CGCaaG-CGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 29789 0.67 0.726533
Target:  5'- -cGUCGGCGUCGUAgauuuccggcGCGUaUUGCGAuGCa -3'
miRNA:   3'- gcUAGUCGCAGCGU----------CGCA-AGCGCU-UG- -5'
24233 5' -53.8 NC_005263.2 + 40053 0.67 0.715697
Target:  5'- uGAUCA-CGgaacucgCGCGGCGccacggCGCGGACg -3'
miRNA:   3'- gCUAGUcGCa------GCGUCGCaa----GCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 12531 0.67 0.715697
Target:  5'- cCGGUCAGauucugacgGcCGCAcaacuaaaugcuGCGUUUGCGAACg -3'
miRNA:   3'- -GCUAGUCg--------CaGCGU------------CGCAAGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 12147 0.67 0.69378
Target:  5'- gCGGUCgAGCGccuugcaCGCAGCGUcaacgaUCGCGGc- -3'
miRNA:   3'- -GCUAG-UCGCa------GCGUCGCA------AGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 9540 0.67 0.69378
Target:  5'- gCGG-CAGCGaccgaCGCGGCGcUCGCGGc- -3'
miRNA:   3'- -GCUaGUCGCa----GCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 17817 0.67 0.69378
Target:  5'- gCGccCGGCGcugUCGCGGacaCGUUCGCGAAa -3'
miRNA:   3'- -GCuaGUCGC---AGCGUC---GCAAGCGCUUg -5'
24233 5' -53.8 NC_005263.2 + 22380 0.67 0.69378
Target:  5'- uCGAUCGGCGgcaUCG-GGCaGgcCGCGAACg -3'
miRNA:   3'- -GCUAGUCGC---AGCgUCG-CaaGCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 30911 0.67 0.682724
Target:  5'- aCGAgUCgAGCGcggCGaCGGCGUacgCGCGAGCu -3'
miRNA:   3'- -GCU-AG-UCGCa--GC-GUCGCAa--GCGCUUG- -5'
24233 5' -53.8 NC_005263.2 + 6825 0.67 0.682724
Target:  5'- uCGAUCuGCGggaagCGCAGCGacgGCGAcACg -3'
miRNA:   3'- -GCUAGuCGCa----GCGUCGCaagCGCU-UG- -5'
24233 5' -53.8 NC_005263.2 + 34009 0.67 0.682724
Target:  5'- uGG-CuGCGUCGCGGCGcgCGauccaGAGCu -3'
miRNA:   3'- gCUaGuCGCAGCGUCGCaaGCg----CUUG- -5'
24233 5' -53.8 NC_005263.2 + 19743 0.67 0.682724
Target:  5'- gCGAUCGGCGcuggcgcgcUgGCGGCGcUCGUGGc- -3'
miRNA:   3'- -GCUAGUCGC---------AgCGUCGCaAGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 16428 0.67 0.682724
Target:  5'- -cGUCGGCGcuggCGCGGCGggccUCGCuGGCa -3'
miRNA:   3'- gcUAGUCGCa---GCGUCGCa---AGCGcUUG- -5'
24233 5' -53.8 NC_005263.2 + 2213 0.67 0.681615
Target:  5'- gCGAUC-GUGuaguuguUCGCcGCGUUCGCGuACg -3'
miRNA:   3'- -GCUAGuCGC-------AGCGuCGCAAGCGCuUG- -5'
24233 5' -53.8 NC_005263.2 + 19867 0.68 0.671618
Target:  5'- aGGUCacGGCGagCGCGGCGagCGCGGc- -3'
miRNA:   3'- gCUAG--UCGCa-GCGUCGCaaGCGCUug -5'
24233 5' -53.8 NC_005263.2 + 45166 0.68 0.671618
Target:  5'- --uUCGGCGgcggCGaUGGCGcaUUCGCGAGCa -3'
miRNA:   3'- gcuAGUCGCa---GC-GUCGC--AAGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.