miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 3' -62.1 NC_005263.2 + 975 0.66 0.338254
Target:  5'- gUCGCCuGCGCGUCggacggCGCUucguuucaucggGCGGCGUGu -3'
miRNA:   3'- gAGCGGcCGCGUAG------GCGG------------CGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 14156 0.66 0.330427
Target:  5'- aCUCGCCGGCccGCAguugUCGCCGUucuauGCGa- -3'
miRNA:   3'- -GAGCGGCCG--CGUa---GGCGGCGc----UGCau -5'
24234 3' -62.1 NC_005263.2 + 28242 0.66 0.330427
Target:  5'- gCUCGCC-GCGC--UCGCCGUGACc-- -3'
miRNA:   3'- -GAGCGGcCGCGuaGGCGGCGCUGcau -5'
24234 3' -62.1 NC_005263.2 + 31722 0.66 0.330427
Target:  5'- -aUGCCGGCcagcuucaucagGCcgCCGCCgaGCGACGc- -3'
miRNA:   3'- gaGCGGCCG------------CGuaGGCGG--CGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 46925 0.66 0.318181
Target:  5'- -gCGCUGccGCGCAgcacgaggcacaagUCGCCGCGACGg- -3'
miRNA:   3'- gaGCGGC--CGCGUa-------------GGCGGCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 26305 0.66 0.315174
Target:  5'- gCUCGCCGGC-CAgcugCagGCCGguCGGCGUGa -3'
miRNA:   3'- -GAGCGGCCGcGUa---Gg-CGGC--GCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 18592 0.66 0.315174
Target:  5'- -cUGCUGGCGCGccgacggacgCCGCaGCGGCGUu -3'
miRNA:   3'- gaGCGGCCGCGUa---------GGCGgCGCUGCAu -5'
24234 3' -62.1 NC_005263.2 + 38648 0.66 0.315174
Target:  5'- --aGCCgGGCGCG-CCGCUGCccGugGUGc -3'
miRNA:   3'- gagCGG-CCGCGUaGGCGGCG--CugCAU- -5'
24234 3' -62.1 NC_005263.2 + 27414 0.66 0.315174
Target:  5'- -aCGaCCGGCGCAgguuucgcgCCGCCGaacacgcuuuCGACGg- -3'
miRNA:   3'- gaGC-GGCCGCGUa--------GGCGGC----------GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 35429 0.67 0.310703
Target:  5'- gCUCGacgcgaacgacgaccCCGGCGCGcCgGCCGaCGACGa- -3'
miRNA:   3'- -GAGC---------------GGCCGCGUaGgCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 44763 0.67 0.307749
Target:  5'- gCUCGaCCGcGCGCGg-CGCCGgCGGCGc- -3'
miRNA:   3'- -GAGC-GGC-CGCGUagGCGGC-GCUGCau -5'
24234 3' -62.1 NC_005263.2 + 43373 0.67 0.307749
Target:  5'- --aGCUGGCGUGcUCGCgggCGCGACGUAc -3'
miRNA:   3'- gagCGGCCGCGUaGGCG---GCGCUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 14518 0.67 0.307749
Target:  5'- aUCaGCgCGGCGcCGUUCGCCGCuuuuucGAUGUAg -3'
miRNA:   3'- gAG-CG-GCCGC-GUAGGCGGCG------CUGCAU- -5'
24234 3' -62.1 NC_005263.2 + 26245 0.67 0.300459
Target:  5'- uCUUGCCGGC-CGUCgCGaaCGCGGCGa- -3'
miRNA:   3'- -GAGCGGCCGcGUAG-GCg-GCGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 17752 0.67 0.293302
Target:  5'- -gCGCCGGCgGCAgcgCgGCCGCGcuCGg- -3'
miRNA:   3'- gaGCGGCCG-CGUa--GgCGGCGCu-GCau -5'
24234 3' -62.1 NC_005263.2 + 4242 0.67 0.293302
Target:  5'- -aCGUCGGCGuCAggaUGCCGCGcACGUu -3'
miRNA:   3'- gaGCGGCCGC-GUag-GCGGCGC-UGCAu -5'
24234 3' -62.1 NC_005263.2 + 14107 0.67 0.293302
Target:  5'- -cUGCgCGGCgGUcgCCGUCGCGAuCGUAg -3'
miRNA:   3'- gaGCG-GCCG-CGuaGGCGGCGCU-GCAU- -5'
24234 3' -62.1 NC_005263.2 + 19135 0.67 0.28628
Target:  5'- aUCGCCgGGCGCuugcgcgUCGUCGUGAcCGUGc -3'
miRNA:   3'- gAGCGG-CCGCGua-----GGCGGCGCU-GCAU- -5'
24234 3' -62.1 NC_005263.2 + 16545 0.67 0.28628
Target:  5'- gUCGagcaCGGCGCG-CCGCCugggcaGCGACGc- -3'
miRNA:   3'- gAGCg---GCCGCGUaGGCGG------CGCUGCau -5'
24234 3' -62.1 NC_005263.2 + 32481 0.67 0.28628
Target:  5'- -gCGUCGGCGCAUUCa--GCGACGg- -3'
miRNA:   3'- gaGCGGCCGCGUAGGcggCGCUGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.