miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24234 5' -53 NC_005263.2 + 24832 0.66 0.799723
Target:  5'- -aCGGccggCGgcaACGGCGGUgccgGugCGCCa -3'
miRNA:   3'- aaGUCua--GCa--UGCCGUCAa---CugGCGG- -5'
24234 5' -53 NC_005263.2 + 883 0.66 0.769155
Target:  5'- -cCGGcgcuUCGUucagcGCGGCGGUc-GCCGCCg -3'
miRNA:   3'- aaGUCu---AGCA-----UGCCGUCAacUGGCGG- -5'
24234 5' -53 NC_005263.2 + 45053 0.66 0.758649
Target:  5'- -cCGGGcaUCGUcaACGGCGGUcaACUGCCg -3'
miRNA:   3'- aaGUCU--AGCA--UGCCGUCAacUGGCGG- -5'
24234 5' -53 NC_005263.2 + 30286 0.67 0.748006
Target:  5'- aUCGGGccgCGcGCGGCAuccucGGCCGCCu -3'
miRNA:   3'- aAGUCUa--GCaUGCCGUcaa--CUGGCGG- -5'
24234 5' -53 NC_005263.2 + 25621 0.67 0.737238
Target:  5'- aUCGGAuaguUCGUcGCGccGUAGUUGAUCGCg -3'
miRNA:   3'- aAGUCU----AGCA-UGC--CGUCAACUGGCGg -5'
24234 5' -53 NC_005263.2 + 5847 0.67 0.726358
Target:  5'- gUCGGccGUCGUGCGGUcgaAGUcGAgCCGCa -3'
miRNA:   3'- aAGUC--UAGCAUGCCG---UCAaCU-GGCGg -5'
24234 5' -53 NC_005263.2 + 24238 0.67 0.726358
Target:  5'- aUCu--UCGccuUGCGGCGGUacGCCGCCa -3'
miRNA:   3'- aAGucuAGC---AUGCCGUCAacUGGCGG- -5'
24234 5' -53 NC_005263.2 + 38702 0.67 0.726358
Target:  5'- -gCAaGUCGUACuucgucgaGCAGcUGGCCGCCg -3'
miRNA:   3'- aaGUcUAGCAUGc-------CGUCaACUGGCGG- -5'
24234 5' -53 NC_005263.2 + 2274 0.67 0.726358
Target:  5'- -gCAGcgCGUucgccguCGGCAGgucGugCGCCg -3'
miRNA:   3'- aaGUCuaGCAu------GCCGUCaa-CugGCGG- -5'
24234 5' -53 NC_005263.2 + 20928 0.67 0.704312
Target:  5'- -aCGGAUCGcagACGaauGCGGUgaUGACgGCCg -3'
miRNA:   3'- aaGUCUAGCa--UGC---CGUCA--ACUGgCGG- -5'
24234 5' -53 NC_005263.2 + 33774 0.67 0.704312
Target:  5'- -aUAGAacgUCGUGCGGCAGUaGcgcuucCCGUCa -3'
miRNA:   3'- aaGUCU---AGCAUGCCGUCAaCu-----GGCGG- -5'
24234 5' -53 NC_005263.2 + 3417 0.68 0.681965
Target:  5'- ---cGAcgUGUGCGcGCAGgaUGGCCGCCg -3'
miRNA:   3'- aaguCUa-GCAUGC-CGUCa-ACUGGCGG- -5'
24234 5' -53 NC_005263.2 + 29451 0.68 0.67071
Target:  5'- aUUCGGAuUCGc-CGGCAGcguACCGCCa -3'
miRNA:   3'- -AAGUCU-AGCauGCCGUCaacUGGCGG- -5'
24234 5' -53 NC_005263.2 + 2900 0.68 0.669583
Target:  5'- -----uUCGgGCGGCagguggacgccauAGUUGGCCGCCa -3'
miRNA:   3'- aagucuAGCaUGCCG-------------UCAACUGGCGG- -5'
24234 5' -53 NC_005263.2 + 14123 0.68 0.646964
Target:  5'- gUCGcGAUCGUagccgcaGCGGcCAGcgcGGCCGCCu -3'
miRNA:   3'- aAGU-CUAGCA-------UGCC-GUCaa-CUGGCGG- -5'
24234 5' -53 NC_005263.2 + 44895 0.69 0.636761
Target:  5'- aUCGGggCGgGCGGCGGccgGGCCGgCu -3'
miRNA:   3'- aAGUCuaGCaUGCCGUCaa-CUGGCgG- -5'
24234 5' -53 NC_005263.2 + 27181 0.69 0.633359
Target:  5'- gUCGGcgCGUucacgacgaaacugGCGGC-GUUGAUCGUCg -3'
miRNA:   3'- aAGUCuaGCA--------------UGCCGuCAACUGGCGG- -5'
24234 5' -53 NC_005263.2 + 31006 0.7 0.570135
Target:  5'- -cCAGAUCGUGCaGCAGUgcggcgaggcgcggcGugCGCUg -3'
miRNA:   3'- aaGUCUAGCAUGcCGUCAa--------------CugGCGG- -5'
24234 5' -53 NC_005263.2 + 986 0.7 0.562317
Target:  5'- gUCGGAcggcgcuucguuucaUCGgGCGGCGuGUUGGCUGCUu -3'
miRNA:   3'- aAGUCU---------------AGCaUGCCGU-CAACUGGCGG- -5'
24234 5' -53 NC_005263.2 + 28111 0.7 0.535751
Target:  5'- aUCGcGUCGUugACGGCAGUggcGCCGUCu -3'
miRNA:   3'- aAGUcUAGCA--UGCCGUCAac-UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.