miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24235 5' -66 NC_005263.2 + 23278 0.66 0.229485
Target:  5'- aCGCCGUggaaGCCCUGGggacaGGCGCCGuuuuacGGCg -3'
miRNA:   3'- -GCGGCGgg--CGGGGCUa----CUGCGGC------CCG- -5'
24235 5' -66 NC_005263.2 + 25607 0.66 0.229485
Target:  5'- aGCCGCCgaacCGCCgCCGGc--CGCCGccGGCg -3'
miRNA:   3'- gCGGCGG----GCGG-GGCUacuGCGGC--CCG- -5'
24235 5' -66 NC_005263.2 + 41321 0.66 0.227255
Target:  5'- aCGCCGCCCGCCggcgucaCCGAUuacgaucucgaaacGAuCGCaGcGGCu -3'
miRNA:   3'- -GCGGCGGGCGG-------GGCUA--------------CU-GCGgC-CCG- -5'
24235 5' -66 NC_005263.2 + 20319 0.66 0.223944
Target:  5'- gGCCG-CCGUCCCGAcGAucacCGCUGucGGCa -3'
miRNA:   3'- gCGGCgGGCGGGGCUaCU----GCGGC--CCG- -5'
24235 5' -66 NC_005263.2 + 23034 0.66 0.223944
Target:  5'- gCGCCaCCCGaauugCCGGUcGACGUCGGGa -3'
miRNA:   3'- -GCGGcGGGCgg---GGCUA-CUGCGGCCCg -5'
24235 5' -66 NC_005263.2 + 29541 0.66 0.223944
Target:  5'- gGCCGggaCGCCaCCGG---UGCCGGGCu -3'
miRNA:   3'- gCGGCgg-GCGG-GGCUacuGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 38727 0.66 0.223396
Target:  5'- gGCCGCCgCGCugaaauuCCCGcaGcCGCCGGcGCu -3'
miRNA:   3'- gCGGCGG-GCG-------GGGCuaCuGCGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 33654 0.67 0.213202
Target:  5'- cCGCCGCUCGgCUCGAaagaGGCGCgCGcGCa -3'
miRNA:   3'- -GCGGCGGGCgGGGCUa---CUGCG-GCcCG- -5'
24235 5' -66 NC_005263.2 + 38598 0.67 0.208
Target:  5'- cCGCacgauucaGCCCGCgCaCgCGAUGgauaGCGCCGGcGCg -3'
miRNA:   3'- -GCGg-------CGGGCG-G-G-GCUAC----UGCGGCC-CG- -5'
24235 5' -66 NC_005263.2 + 31348 0.67 0.208
Target:  5'- aGuuGUCUggcauGCCUuuCGAcagcgugacUGACGCCGGGCa -3'
miRNA:   3'- gCggCGGG-----CGGG--GCU---------ACUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 38918 0.67 0.202907
Target:  5'- aGCCgGCgCCGCgCCGAgcucGACGUCGcGCa -3'
miRNA:   3'- gCGG-CG-GGCGgGGCUa---CUGCGGCcCG- -5'
24235 5' -66 NC_005263.2 + 33949 0.67 0.197922
Target:  5'- gGCCGCCgG-CCCGAaGuCGCCaaGGCg -3'
miRNA:   3'- gCGGCGGgCgGGGCUaCuGCGGc-CCG- -5'
24235 5' -66 NC_005263.2 + 6747 0.67 0.197922
Target:  5'- uCGCgCGUCaCGUCCaucgcGCGCCGGGCg -3'
miRNA:   3'- -GCG-GCGG-GCGGGgcuacUGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 19312 0.67 0.19743
Target:  5'- aCGCgGCCCGCCggcugugcgguggUCGAUGucgaaguacucGCGCCGGu- -3'
miRNA:   3'- -GCGgCGGGCGG-------------GGCUAC-----------UGCGGCCcg -5'
24235 5' -66 NC_005263.2 + 38384 0.67 0.196448
Target:  5'- uGCCGCCCGaggCCGAacugaucgacgcacUGucgcGCGUCGGGUg -3'
miRNA:   3'- gCGGCGGGCgg-GGCU--------------AC----UGCGGCCCG- -5'
24235 5' -66 NC_005263.2 + 14134 0.67 0.196448
Target:  5'- aGCCGCagcggccagcgcggCCGCCuuGgcGACuUCGGGCc -3'
miRNA:   3'- gCGGCG--------------GGCGGggCuaCUGcGGCCCG- -5'
24235 5' -66 NC_005263.2 + 47113 0.67 0.193045
Target:  5'- aCGCCGCCCgaugaaacgaaaGCgCCGuccGACGCgCaGGCg -3'
miRNA:   3'- -GCGGCGGG------------CGgGGCua-CUGCG-GcCCG- -5'
24235 5' -66 NC_005263.2 + 29354 0.67 0.193045
Target:  5'- -aCCGCgCCGCCUaCGAUcGCGCCGaucuGGCg -3'
miRNA:   3'- gcGGCG-GGCGGG-GCUAcUGCGGC----CCG- -5'
24235 5' -66 NC_005263.2 + 30356 0.67 0.188274
Target:  5'- gCGCgGCCgCGCUgCCGccGGCGCCGaGuGCg -3'
miRNA:   3'- -GCGgCGG-GCGG-GGCuaCUGCGGC-C-CG- -5'
24235 5' -66 NC_005263.2 + 42732 0.67 0.187802
Target:  5'- aCGCCGgcuucaaCCCGaucgaCCCGAaGAauCCGGGCa -3'
miRNA:   3'- -GCGGC-------GGGCg----GGGCUaCUgcGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.