miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24236 3' -54.3 NC_005263.2 + 1441 0.66 0.746141
Target:  5'- uGCgCGCGagGcUUCGCgGCGcUCGCGGCGc -3'
miRNA:   3'- -UG-GUGUagC-AAGCGgUGU-AGCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 2215 0.66 0.746141
Target:  5'- gAUCGuguaGUUGUUCGCCGCGUuCGCGuacGCGc -3'
miRNA:   3'- -UGGUg---UAGCAAGCGGUGUA-GCGU---CGC- -5'
24236 3' -54.3 NC_005263.2 + 25 0.66 0.746141
Target:  5'- gUCGCAUCug-CGUCACuggCGCGGCa -3'
miRNA:   3'- uGGUGUAGcaaGCGGUGua-GCGUCGc -5'
24236 3' -54.3 NC_005263.2 + 39072 0.66 0.745081
Target:  5'- --gACGUCGUagccggcUCGCCGUcgCGCGGCa -3'
miRNA:   3'- uggUGUAGCA-------AGCGGUGuaGCGUCGc -5'
24236 3' -54.3 NC_005263.2 + 35888 0.66 0.742957
Target:  5'- cACCGCAUUcgacugGUUCgauccggacgagcuGCCGCAUCGCuucaucGCGa -3'
miRNA:   3'- -UGGUGUAG------CAAG--------------CGGUGUAGCGu-----CGC- -5'
24236 3' -54.3 NC_005263.2 + 4061 0.66 0.735486
Target:  5'- uACCACcagc--CGCCACGgaaCGCGGCGa -3'
miRNA:   3'- -UGGUGuagcaaGCGGUGUa--GCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 31220 0.66 0.735486
Target:  5'- cACCGCGUCGUagaaCGCGUCG-AGCGc -3'
miRNA:   3'- -UGGUGUAGCAagcgGUGUAGCgUCGC- -5'
24236 3' -54.3 NC_005263.2 + 33417 0.66 0.735486
Target:  5'- gAUCGCcUUGagCGCCGCGcgcgCGUAGCGg -3'
miRNA:   3'- -UGGUGuAGCaaGCGGUGUa---GCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 47154 0.66 0.735486
Target:  5'- gACCGCcgCuacgUCGCCGC-UCGCGGg- -3'
miRNA:   3'- -UGGUGuaGca--AGCGGUGuAGCGUCgc -5'
24236 3' -54.3 NC_005263.2 + 3488 0.66 0.735486
Target:  5'- uGCCGCAgcgagUCGggcaagUUGUCGCG-CGCGGCa -3'
miRNA:   3'- -UGGUGU-----AGCa-----AGCGGUGUaGCGUCGc -5'
24236 3' -54.3 NC_005263.2 + 32771 0.66 0.733341
Target:  5'- cGCCGCGUCGggguucucggugUCGgcCCGCGccucgCGCAGCu -3'
miRNA:   3'- -UGGUGUAGCa-----------AGC--GGUGUa----GCGUCGc -5'
24236 3' -54.3 NC_005263.2 + 47502 0.66 0.724722
Target:  5'- aGCCG-AUUGcgCGaagCACAUCGCGGCGc -3'
miRNA:   3'- -UGGUgUAGCaaGCg--GUGUAGCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 27805 0.66 0.724722
Target:  5'- cAUCGcCGUCGUgaUCGCgGCGucaccuUCGCGGCa -3'
miRNA:   3'- -UGGU-GUAGCA--AGCGgUGU------AGCGUCGc -5'
24236 3' -54.3 NC_005263.2 + 8488 0.66 0.72364
Target:  5'- uGCCGCugucgccGUCGgacgaguagUCGCCAUA-CGUGGCGa -3'
miRNA:   3'- -UGGUG-------UAGCa--------AGCGGUGUaGCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 2761 0.66 0.713863
Target:  5'- gGCCGCcgugccgGUCGUguUCGUCACGaccgugaagcgauugCGCAGCGc -3'
miRNA:   3'- -UGGUG-------UAGCA--AGCGGUGUa--------------GCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 2032 0.66 0.712772
Target:  5'- gGCCGCAUCGaucacgUCGacgcCCGCGcgguaguUCGCGGUGu -3'
miRNA:   3'- -UGGUGUAGCa-----AGC----GGUGU-------AGCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 3013 0.66 0.70292
Target:  5'- cACgGCGUCGUauUCaaugcuguaaauGUC-CAUCGCAGCGa -3'
miRNA:   3'- -UGgUGUAGCA--AG------------CGGuGUAGCGUCGC- -5'
24236 3' -54.3 NC_005263.2 + 32273 0.66 0.70292
Target:  5'- aGCCACG-CGaagcgCGCCAgGUCGgAGCc -3'
miRNA:   3'- -UGGUGUaGCaa---GCGGUgUAGCgUCGc -5'
24236 3' -54.3 NC_005263.2 + 36106 0.66 0.70292
Target:  5'- gUCGCGUUGaUgGCCGCGUCGUAcuuGCGc -3'
miRNA:   3'- uGGUGUAGCaAgCGGUGUAGCGU---CGC- -5'
24236 3' -54.3 NC_005263.2 + 14135 0.67 0.691907
Target:  5'- cGCCGCuaCGaUUCGCCGCAcacUCGcCGGCc -3'
miRNA:   3'- -UGGUGuaGC-AAGCGGUGU---AGC-GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.