miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24236 5' -58.7 NC_005263.2 + 17122 0.66 0.506068
Target:  5'- uGGCguccgGCCUG-GGGUuccucggCGaAGCGGUCGACg -3'
miRNA:   3'- -CCG-----CGGACgCCCG-------GCaUCGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 28190 0.66 0.504007
Target:  5'- cGGCGCCuucUGCauGCCGUugccggcguucacaGGCAcggcGUCGGCa -3'
miRNA:   3'- -CCGCGG---ACGccCGGCA--------------UCGU----UAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 17332 0.66 0.496823
Target:  5'- cGGCGCCgGUGGcuucgaCGUucggcaucGCGGUCGACg -3'
miRNA:   3'- -CCGCGGaCGCCcg----GCAu-------CGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 25025 0.66 0.476559
Target:  5'- cGGUGgCUGCGGuGgCGU-GUAcgCGGCa -3'
miRNA:   3'- -CCGCgGACGCC-CgGCAuCGUuaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 26117 0.66 0.466582
Target:  5'- cGCGCCgcucgaagucaGCGGGUCGacguUGGCGAUCaACu -3'
miRNA:   3'- cCGCGGa----------CGCCCGGC----AUCGUUAGcUG- -5'
24236 5' -58.7 NC_005263.2 + 14247 0.66 0.466582
Target:  5'- uGGCGU--GCGGGCUGgcuugcGGCGGcCGGCg -3'
miRNA:   3'- -CCGCGgaCGCCCGGCa-----UCGUUaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 14960 0.66 0.466582
Target:  5'- aGGCGCCgcgccaugGCuGGCgGcAGCGAUCuGCg -3'
miRNA:   3'- -CCGCGGa-------CGcCCGgCaUCGUUAGcUG- -5'
24236 5' -58.7 NC_005263.2 + 27893 0.66 0.466582
Target:  5'- cGGCGCgCaGuCGGGCaa-AGCAcUCGACg -3'
miRNA:   3'- -CCGCG-GaC-GCCCGgcaUCGUuAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 35543 0.66 0.466582
Target:  5'- cGGCGC--GCGGGCgGgcGCua-CGGCg -3'
miRNA:   3'- -CCGCGgaCGCCCGgCauCGuuaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 20575 0.66 0.46559
Target:  5'- --gGCCUGCcGGCCGUgccgacgGGCAccgCGACc -3'
miRNA:   3'- ccgCGGACGcCCGGCA-------UCGUua-GCUG- -5'
24236 5' -58.7 NC_005263.2 + 9979 0.66 0.456714
Target:  5'- aGUGCCggGCaGGCCGUucAGCA--UGACg -3'
miRNA:   3'- cCGCGGa-CGcCCGGCA--UCGUuaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 31241 0.66 0.453775
Target:  5'- gGGCGCUUcgguuccgcgcggcGCGGcGCCG-GGCAgGUCGAa -3'
miRNA:   3'- -CCGCGGA--------------CGCC-CGGCaUCGU-UAGCUg -5'
24236 5' -58.7 NC_005263.2 + 10192 0.67 0.446959
Target:  5'- cGCGCCUGCGcccGGCUGUucGUuuUCGGg -3'
miRNA:   3'- cCGCGGACGC---CCGGCAu-CGuuAGCUg -5'
24236 5' -58.7 NC_005263.2 + 9374 0.67 0.446959
Target:  5'- cGGCGgCUGCGGGaauuucagCGcGGCGGccagcugcUCGACg -3'
miRNA:   3'- -CCGCgGACGCCCg-------GCaUCGUU--------AGCUG- -5'
24236 5' -58.7 NC_005263.2 + 14690 0.67 0.446959
Target:  5'- cGCGCgC-GCGGcGCUcaaGGCGAUCGACg -3'
miRNA:   3'- cCGCG-GaCGCC-CGGca-UCGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 16431 0.67 0.446959
Target:  5'- cGGCGCUggcgcgGCGGGCCucgcUGGCAugguacUCGcACu -3'
miRNA:   3'- -CCGCGGa-----CGCCCGGc---AUCGUu-----AGC-UG- -5'
24236 5' -58.7 NC_005263.2 + 25875 0.67 0.446959
Target:  5'- cGGCGUCgcaacCGGGCCGacgccGGCGA-CGGCc -3'
miRNA:   3'- -CCGCGGac---GCCCGGCa----UCGUUaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 30792 0.67 0.437321
Target:  5'- cGGCGCCgggccgaauucGCGcGCCGUGGCGAcugccUCG-Cg -3'
miRNA:   3'- -CCGCGGa----------CGCcCGGCAUCGUU-----AGCuG- -5'
24236 5' -58.7 NC_005263.2 + 20658 0.67 0.427804
Target:  5'- cGCGCCgcucGuCGcGGCCGUcgaaAGCGuguUCGGCg -3'
miRNA:   3'- cCGCGGa---C-GC-CCGGCA----UCGUu--AGCUG- -5'
24236 5' -58.7 NC_005263.2 + 28375 0.67 0.41841
Target:  5'- -cCGUCgUGCuGGCCG-AGUAGUCGACc -3'
miRNA:   3'- ccGCGG-ACGcCCGGCaUCGUUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.