miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24236 5' -58.7 NC_005263.2 + 3621 1.1 0.000321
Target:  5'- gGGCGCCUGCGGGCCGUAGCAAUCGACc -3'
miRNA:   3'- -CCGCGGACGCCCGGCAUCGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 28375 0.67 0.41841
Target:  5'- -cCGUCgUGCuGGCCG-AGUAGUCGACc -3'
miRNA:   3'- ccGCGG-ACGcCCGGCaUCGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 30792 0.67 0.437321
Target:  5'- cGGCGCCgggccgaauucGCGcGCCGUGGCGAcugccUCG-Cg -3'
miRNA:   3'- -CCGCGGa----------CGCcCGGCAUCGUU-----AGCuG- -5'
24236 5' -58.7 NC_005263.2 + 28190 0.66 0.504007
Target:  5'- cGGCGCCuucUGCauGCCGUugccggcguucacaGGCAcggcGUCGGCa -3'
miRNA:   3'- -CCGCGG---ACGccCGGCA--------------UCGU----UAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 35283 0.73 0.189565
Target:  5'- uGGCGCCaagUGCGGcGCCauaaauGUAAUCGGCu -3'
miRNA:   3'- -CCGCGG---ACGCC-CGGcau---CGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 12551 0.71 0.233827
Target:  5'- cGGCgGCCgGCGGcGCCGUAGCGccCGcccGCg -3'
miRNA:   3'- -CCG-CGGaCGCC-CGGCAUCGUuaGC---UG- -5'
24236 5' -58.7 NC_005263.2 + 11903 0.7 0.27248
Target:  5'- gGGCGCCUGCGcGCUGgcguccuguGCGAUaucCGGCa -3'
miRNA:   3'- -CCGCGGACGCcCGGCau-------CGUUA---GCUG- -5'
24236 5' -58.7 NC_005263.2 + 6620 0.7 0.27248
Target:  5'- cGGCGCgCUcgGCGcGGUCG-AGCAGUCGcGCg -3'
miRNA:   3'- -CCGCG-GA--CGC-CCGGCaUCGUUAGC-UG- -5'
24236 5' -58.7 NC_005263.2 + 19706 0.68 0.379488
Target:  5'- cGGCGCCUcCGGGgguauccgcaugauCCaGUucuauGCGAUCGGCg -3'
miRNA:   3'- -CCGCGGAcGCCC--------------GG-CAu----CGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 32648 0.67 0.400004
Target:  5'- cGGCcgaaaGCCUuccggauggcGCGGGUCGgcGGCGauGUCGACg -3'
miRNA:   3'- -CCG-----CGGA----------CGCCCGGCa-UCGU--UAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 45256 0.68 0.382124
Target:  5'- uGGCGg--GCGGGCCGgcccGCAuUCGAa -3'
miRNA:   3'- -CCGCggaCGCCCGGCau--CGUuAGCUg -5'
24236 5' -58.7 NC_005263.2 + 19754 0.69 0.323863
Target:  5'- uGGCGCgCUgGCGGcGCuCGUGGCcguGUgGGCa -3'
miRNA:   3'- -CCGCG-GA-CGCC-CG-GCAUCGu--UAgCUG- -5'
24236 5' -58.7 NC_005263.2 + 33950 0.76 0.109768
Target:  5'- cGGCGacaaCUGCGGGCCGgcgAGUgugCGGCg -3'
miRNA:   3'- -CCGCg---GACGCCCGGCa--UCGuuaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 92 0.67 0.400004
Target:  5'- aGCGCCUGCccgccGGuGCCGgUAGUcguGUCGAg -3'
miRNA:   3'- cCGCGGACG-----CC-CGGC-AUCGu--UAGCUg -5'
24236 5' -58.7 NC_005263.2 + 6054 0.76 0.109768
Target:  5'- -cCGCCUGCGcGCCGUAGU--UCGACg -3'
miRNA:   3'- ccGCGGACGCcCGGCAUCGuuAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 2397 0.69 0.3161
Target:  5'- cGGCGCCgGCGGucgcuuggucGCCGUA-CAG-CGGCa -3'
miRNA:   3'- -CCGCGGaCGCC----------CGGCAUcGUUaGCUG- -5'
24236 5' -58.7 NC_005263.2 + 26241 0.67 0.400004
Target:  5'- aGCGuCUUGCcGGCCGUcGCGAacgCGGCg -3'
miRNA:   3'- cCGC-GGACGcCCGGCAuCGUUa--GCUG- -5'
24236 5' -58.7 NC_005263.2 + 20658 0.67 0.427804
Target:  5'- cGCGCCgcucGuCGcGGCCGUcgaaAGCGuguUCGGCg -3'
miRNA:   3'- cCGCGGa---C-GC-CCGGCA----UCGUu--AGCUG- -5'
24236 5' -58.7 NC_005263.2 + 33427 0.76 0.116059
Target:  5'- aGCGCC-GCGcGCgCGUAGCGGUCGGCc -3'
miRNA:   3'- cCGCGGaCGCcCG-GCAUCGUUAGCUG- -5'
24236 5' -58.7 NC_005263.2 + 7232 0.71 0.246173
Target:  5'- cGGCGCCaUGCGGuGCaCGcgaGGCucUCGACc -3'
miRNA:   3'- -CCGCGG-ACGCC-CG-GCa--UCGuuAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.