miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24237 3' -58.3 NC_005263.2 + 26327 0.66 0.521345
Target:  5'- uGCGCGaGUGAuucgCGCCACUCgUGCg -3'
miRNA:   3'- uUGCGC-CGCUuca-GCGGUGGGaACGg -5'
24237 3' -58.3 NC_005263.2 + 28315 0.66 0.521345
Target:  5'- -uCGCGGCGcgaaucuGGUCgGCCGCCga-GCCc -3'
miRNA:   3'- uuGCGCCGCu------UCAG-CGGUGGgaaCGG- -5'
24237 3' -58.3 NC_005263.2 + 20190 0.66 0.521345
Target:  5'- cGCGCcgGGCGAcG-CGCCGCCgucgagugcUUUGCCc -3'
miRNA:   3'- uUGCG--CCGCUuCaGCGGUGG---------GAACGG- -5'
24237 3' -58.3 NC_005263.2 + 12672 0.66 0.521345
Target:  5'- cGGCGCGcCGggGUCGUCGuuCgcgucgagcUUGCCg -3'
miRNA:   3'- -UUGCGCcGCuuCAGCGGUggG---------AACGG- -5'
24237 3' -58.3 NC_005263.2 + 28185 0.66 0.521345
Target:  5'- uAGCGCGGCGccuUCuGCaUGCCgUUGCCg -3'
miRNA:   3'- -UUGCGCCGCuucAG-CG-GUGGgAACGG- -5'
24237 3' -58.3 NC_005263.2 + 33590 0.66 0.521345
Target:  5'- --aGCGGCGAAcggCGCCGCgCUgaucgauaUGCUg -3'
miRNA:   3'- uugCGCCGCUUca-GCGGUGgGA--------ACGG- -5'
24237 3' -58.3 NC_005263.2 + 35546 0.66 0.520295
Target:  5'- cGCGCgGGCGGgcgcuacGG-CGCCGCCg--GCCg -3'
miRNA:   3'- uUGCG-CCGCU-------UCaGCGGUGGgaaCGG- -5'
24237 3' -58.3 NC_005263.2 + 28208 0.66 0.510882
Target:  5'- -cCGUGGCGAgcuguuGGUgGCCugCaucgGCCg -3'
miRNA:   3'- uuGCGCCGCU------UCAgCGGugGgaa-CGG- -5'
24237 3' -58.3 NC_005263.2 + 12548 0.66 0.499475
Target:  5'- -uCGCGGCGGccggcggcgccguAG-CGcCCGCCCgcgcGCCg -3'
miRNA:   3'- uuGCGCCGCU-------------UCaGC-GGUGGGaa--CGG- -5'
24237 3' -58.3 NC_005263.2 + 31029 0.66 0.490226
Target:  5'- aGGCGCGGCGug--CGCUGCUCgaGCa -3'
miRNA:   3'- -UUGCGCCGCuucaGCGGUGGGaaCGg -5'
24237 3' -58.3 NC_005263.2 + 38899 0.66 0.490226
Target:  5'- cGCGCGcCGuacGAG-CGCCGCCCgUUGCg -3'
miRNA:   3'- uUGCGCcGC---UUCaGCGGUGGG-AACGg -5'
24237 3' -58.3 NC_005263.2 + 15731 0.66 0.490226
Target:  5'- cAGCGCGGCGuuAG-CGCCcaucaaguaACCCcaUUGCg -3'
miRNA:   3'- -UUGCGCCGCu-UCaGCGG---------UGGG--AACGg -5'
24237 3' -58.3 NC_005263.2 + 16871 0.66 0.490226
Target:  5'- cGCGCGGaacCGAAG-CGCC-CCUgcaaGCCg -3'
miRNA:   3'- uUGCGCC---GCUUCaGCGGuGGGaa--CGG- -5'
24237 3' -58.3 NC_005263.2 + 10153 0.66 0.480045
Target:  5'- cGGCGCGGCaucGGccGGUUGCgCACCggcUGCCg -3'
miRNA:   3'- -UUGCGCCG---CU--UCAGCG-GUGGga-ACGG- -5'
24237 3' -58.3 NC_005263.2 + 37026 0.66 0.480045
Target:  5'- cGCGCGGCGucaUC-CCACgCUuuUGCCg -3'
miRNA:   3'- uUGCGCCGCuucAGcGGUGgGA--ACGG- -5'
24237 3' -58.3 NC_005263.2 + 43061 0.66 0.480045
Target:  5'- cGACGuCGGCcaauAGUCgGCCGCCgg-GCCg -3'
miRNA:   3'- -UUGC-GCCGcu--UCAG-CGGUGGgaaCGG- -5'
24237 3' -58.3 NC_005263.2 + 17188 0.66 0.479032
Target:  5'- -uCGCGGCGuacgccGUCGCCGCgCUcgacucgUGCa -3'
miRNA:   3'- uuGCGCCGCuu----CAGCGGUGgGA-------ACGg -5'
24237 3' -58.3 NC_005263.2 + 11182 0.66 0.469968
Target:  5'- cACGCGGUuAAGcCGCUuCCCUguacGCCc -3'
miRNA:   3'- uUGCGCCGcUUCaGCGGuGGGAa---CGG- -5'
24237 3' -58.3 NC_005263.2 + 27051 0.66 0.466966
Target:  5'- uGCGCGGCcgcccgucgggcagGAAGcCGCUACCCaucGUCu -3'
miRNA:   3'- uUGCGCCG--------------CUUCaGCGGUGGGaa-CGG- -5'
24237 3' -58.3 NC_005263.2 + 6374 0.67 0.46
Target:  5'- -cCGCc-CGAAGUUGCCGCCCgcGUCg -3'
miRNA:   3'- uuGCGccGCUUCAGCGGUGGGaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.