miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24237 5' -49.8 NC_005263.2 + 20475 0.66 0.948112
Target:  5'- aCGGCAacgccCGUCGAGguaaagGCCGUGCg -3'
miRNA:   3'- cGCUGUcca--GCAGCUUaaa---CGGCAUG- -5'
24237 5' -49.8 NC_005263.2 + 13472 0.66 0.948112
Target:  5'- cGCGAcCGGGUUGaUCGAGUUguaGuuGUucgGCg -3'
miRNA:   3'- -CGCU-GUCCAGC-AGCUUAAa--CggCA---UG- -5'
24237 5' -49.8 NC_005263.2 + 35990 0.66 0.932428
Target:  5'- cGCGAucugugcauuCAGGcCGUCGAGca--CCGUGCu -3'
miRNA:   3'- -CGCU----------GUCCaGCAGCUUaaacGGCAUG- -5'
24237 5' -49.8 NC_005263.2 + 20520 0.66 0.926603
Target:  5'- cGCG-UAGGauUCGUCGAugugcUGCCGcUGCu -3'
miRNA:   3'- -CGCuGUCC--AGCAGCUuaa--ACGGC-AUG- -5'
24237 5' -49.8 NC_005263.2 + 38860 0.67 0.920478
Target:  5'- aGCGGCGucacGGUCGgcacGUUcGCCGUGCu -3'
miRNA:   3'- -CGCUGU----CCAGCagcuUAAaCGGCAUG- -5'
24237 5' -49.8 NC_005263.2 + 44 0.67 0.920478
Target:  5'- cGCGGCAGGUCGggCGcgccu-UCGUACc -3'
miRNA:   3'- -CGCUGUCCAGCa-GCuuaaacGGCAUG- -5'
24237 5' -49.8 NC_005263.2 + 19870 0.67 0.914054
Target:  5'- cGCGacucGCAGGUa-UCGAuGUUUGCCG-ACg -3'
miRNA:   3'- -CGC----UGUCCAgcAGCU-UAAACGGCaUG- -5'
24237 5' -49.8 NC_005263.2 + 25471 0.67 0.907332
Target:  5'- gGCGGCGGGUaGUUGA---UGCUGUcCa -3'
miRNA:   3'- -CGCUGUCCAgCAGCUuaaACGGCAuG- -5'
24237 5' -49.8 NC_005263.2 + 46069 0.67 0.900315
Target:  5'- cGCG-CGGG-CGUCGAcgUgaucgaugcgGCCGUGa -3'
miRNA:   3'- -CGCuGUCCaGCAGCUuaAa---------CGGCAUg -5'
24237 5' -49.8 NC_005263.2 + 10548 0.67 0.900315
Target:  5'- uGCG-CGGGUUGUCGGccGUcUGCgcgaCGUGCu -3'
miRNA:   3'- -CGCuGUCCAGCAGCU--UAaACG----GCAUG- -5'
24237 5' -49.8 NC_005263.2 + 4671 0.67 0.893006
Target:  5'- gGCGcGCGGGucuuUCGUCaGGAUcgUGCCGUcgGCg -3'
miRNA:   3'- -CGC-UGUCC----AGCAG-CUUAa-ACGGCA--UG- -5'
24237 5' -49.8 NC_005263.2 + 30656 0.67 0.89226
Target:  5'- gGCGGCu-GUCGUCGAGUUUcgacggcgagcugGCCGcuguUGCa -3'
miRNA:   3'- -CGCUGucCAGCAGCUUAAA-------------CGGC----AUG- -5'
24237 5' -49.8 NC_005263.2 + 1691 0.68 0.885411
Target:  5'- cGUG-CAGuacaUCGUCGAGUUgGCCGUGg -3'
miRNA:   3'- -CGCuGUCc---AGCAGCUUAAaCGGCAUg -5'
24237 5' -49.8 NC_005263.2 + 3263 0.68 0.885411
Target:  5'- cGCaGACAGG-CGUCGAGUaucGCCucGCa -3'
miRNA:   3'- -CG-CUGUCCaGCAGCUUAaa-CGGcaUG- -5'
24237 5' -49.8 NC_005263.2 + 8709 0.68 0.882294
Target:  5'- gGCGACAGGUCGgccgCGuccaucgCGUACu -3'
miRNA:   3'- -CGCUGUCCAGCa---GCuuaaacgGCAUG- -5'
24237 5' -49.8 NC_005263.2 + 27971 0.68 0.869383
Target:  5'- cGCGACGGccGUacCGUCGcgcUUGCCGUAa -3'
miRNA:   3'- -CGCUGUC--CA--GCAGCuuaAACGGCAUg -5'
24237 5' -49.8 NC_005263.2 + 12675 0.68 0.869383
Target:  5'- cGCGcCGGGgucgucguucgCGUCGAGcUUGCCG-GCg -3'
miRNA:   3'- -CGCuGUCCa----------GCAGCUUaAACGGCaUG- -5'
24237 5' -49.8 NC_005263.2 + 2289 0.68 0.860964
Target:  5'- uCGGCAGGUCGUgCGccgugGCCG-GCa -3'
miRNA:   3'- cGCUGUCCAGCA-GCuuaaaCGGCaUG- -5'
24237 5' -49.8 NC_005263.2 + 11534 0.69 0.805342
Target:  5'- gGCGGCGcGGuUCGUCGucaccUUGCCGcGCu -3'
miRNA:   3'- -CGCUGU-CC-AGCAGCuua--AACGGCaUG- -5'
24237 5' -49.8 NC_005263.2 + 41173 0.71 0.742669
Target:  5'- gGCGGCc-GUCGUCGAuacGUUgcgcGCUGUGCg -3'
miRNA:   3'- -CGCUGucCAGCAGCU---UAAa---CGGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.