Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 30656 | 0.67 | 0.89226 |
|
Target: 5'- gGCGGCu-GUCGUCGAGUUUcgacggcgagcugGCCGcuguUGCa -3' miRNA: 3'- -CGCUGucCAGCAGCUUAAA-------------CGGC----AUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 34926 | 0.72 | 0.641339 |
|
Target: 5'- cCGACAGGUaCGcacUCGGcgUuagUGCCGUGCc -3' miRNA: 3'- cGCUGUCCA-GC---AGCUuaA---ACGGCAUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 35990 | 0.66 | 0.932428 |
|
Target: 5'- cGCGAucugugcauuCAGGcCGUCGAGca--CCGUGCu -3' miRNA: 3'- -CGCU----------GUCCaGCAGCUUaaacGGCAUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 38860 | 0.67 | 0.920478 |
|
Target: 5'- aGCGGCGucacGGUCGgcacGUUcGCCGUGCu -3' miRNA: 3'- -CGCUGU----CCAGCagcuUAAaCGGCAUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 41173 | 0.71 | 0.742669 |
|
Target: 5'- gGCGGCc-GUCGUCGAuacGUUgcgcGCUGUGCg -3' miRNA: 3'- -CGCUGucCAGCAGCU---UAAa---CGGCAUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 41672 | 0.76 | 0.418967 |
|
Target: 5'- gGCGGCAGaUCGUCGGGcgcggacugcgGCCGUACg -3' miRNA: 3'- -CGCUGUCcAGCAGCUUaaa--------CGGCAUG- -5' |
|||||||
| 24237 | 5' | -49.8 | NC_005263.2 | + | 46069 | 0.67 | 0.900315 |
|
Target: 5'- cGCG-CGGG-CGUCGAcgUgaucgaugcgGCCGUGa -3' miRNA: 3'- -CGCuGUCCaGCAGCUuaAa---------CGGCAUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home