Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 4283 | 1.12 | 0.000523 |
Target: 5'- gACACGAACAUCGUGCCCGGCUCGUCCg -3' miRNA: 3'- -UGUGCUUGUAGCACGGGCCGAGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 39066 | 0.81 | 0.085231 |
Target: 5'- aACGCGGACGUCGUagCCGGCUCG-CCg -3' miRNA: 3'- -UGUGCUUGUAGCAcgGGCCGAGCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 14686 | 0.75 | 0.212381 |
Target: 5'- aACACGAA-GUCGgacGCCUGGC-CGUCCu -3' miRNA: 3'- -UGUGCUUgUAGCa--CGGGCCGaGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 855 | 0.74 | 0.261541 |
Target: 5'- aGCGCGGACAgcguacccgUCGUGCcggCCGGCgcuUCGUUCa -3' miRNA: 3'- -UGUGCUUGU---------AGCACG---GGCCG---AGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 11986 | 0.74 | 0.275198 |
Target: 5'- gGCGCGcAGCGUCGUGUuacgggCCaGCUCGUCg -3' miRNA: 3'- -UGUGC-UUGUAGCACG------GGcCGAGCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 37401 | 0.73 | 0.296743 |
Target: 5'- uGCGCGAcguGCAUCGcgucGCgCGGC-CGUCCu -3' miRNA: 3'- -UGUGCU---UGUAGCa---CGgGCCGaGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 20558 | 0.72 | 0.3437 |
Target: 5'- cCGCGAcGC-UCGUGCCCGGCcUG-CCg -3' miRNA: 3'- uGUGCU-UGuAGCACGGGCCGaGCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 11869 | 0.72 | 0.3437 |
Target: 5'- uUACGAGCAg-GUGCUCGGgCUCGcgCCg -3' miRNA: 3'- uGUGCUUGUagCACGGGCC-GAGCa-GG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 6115 | 0.72 | 0.360498 |
Target: 5'- gGCACGu-CAU-GUGCUCGGCgUCGUUCa -3' miRNA: 3'- -UGUGCuuGUAgCACGGGCCG-AGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 9181 | 0.71 | 0.369109 |
Target: 5'- uGCGCG-ACGUCGaGCUCGGCgcggCGcCCg -3' miRNA: 3'- -UGUGCuUGUAGCaCGGGCCGa---GCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 8286 | 0.71 | 0.404936 |
Target: 5'- aGCGCGAGCggCGUcGgUCGGaUCGUCCa -3' miRNA: 3'- -UGUGCUUGuaGCA-CgGGCCgAGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 19148 | 0.71 | 0.408637 |
Target: 5'- uGCGCGu-CGUCGUGaCCgugcauccgccggcgCGGCUCGUCg -3' miRNA: 3'- -UGUGCuuGUAGCAC-GG---------------GCCGAGCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 31461 | 0.7 | 0.423652 |
Target: 5'- gACGCGAGCGccugcaaguUCGgcGCCUGGCcCGUCa -3' miRNA: 3'- -UGUGCUUGU---------AGCa-CGGGCCGaGCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 25219 | 0.7 | 0.442878 |
Target: 5'- gGCACGAACGcCGUGCcgaucCCGGC-CGacgaaUCCg -3' miRNA: 3'- -UGUGCUUGUaGCACG-----GGCCGaGC-----AGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 43122 | 0.7 | 0.462585 |
Target: 5'- aGCGCGcAACGcUCGUGCCUGGagcgCG-CCg -3' miRNA: 3'- -UGUGC-UUGU-AGCACGGGCCga--GCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 43782 | 0.7 | 0.462585 |
Target: 5'- uGCACG-AUAUCGUGCgCGGCgCGaUCa -3' miRNA: 3'- -UGUGCuUGUAGCACGgGCCGaGC-AGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 31500 | 0.7 | 0.466582 |
Target: 5'- gGCGCGAGCugcugcucgcgcgCGaGCCCGGCgaacgCGUCg -3' miRNA: 3'- -UGUGCUUGua-----------GCaCGGGCCGa----GCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 45097 | 0.69 | 0.471603 |
Target: 5'- cGCGCGcuACGUCGcggcggaUGCgCCGGCgagCGUCUa -3' miRNA: 3'- -UGUGCu-UGUAGC-------ACG-GGCCGa--GCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 16722 | 0.69 | 0.482743 |
Target: 5'- cCGCGAGCGguggCGcaauUGCCCGGCgucaGUCa -3' miRNA: 3'- uGUGCUUGUa---GC----ACGGGCCGag--CAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 18937 | 0.69 | 0.482743 |
Target: 5'- gGCACGAGCGcUCGagcGCgCCGGUUCGagCg -3' miRNA: 3'- -UGUGCUUGU-AGCa--CG-GGCCGAGCagG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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